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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggtctttggtcaatcggattcaattagatctttacatgcatcaagtttagttgactacattgttcttgccttattcag

Basic information

species Vitis vinifera
transcript Vv05s0051g00340.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686767|gb|EE064783.1|EE064783
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
EST: gi|30300026|gb|CB976820.1|CB976820
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
EST: gi|110691710|gb|EE070124.1|EE070124
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
EST: gi|110690897|gb|EE068383.1|EE068383
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAA
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAA
EST: gi|71873742|gb|DT022797.1|DT022797
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
EST: gi|77586617|gb|DV222437.1|DV222437
EST:     AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAG                         ACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG
genomic: AAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggt ... ccttattcagACTCAGAGGCCTTTACTGATTGTTGCTGAAGATGTGGAAAGCGAAGCACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATACATGCTGTTGTGAAAGTGCTAGAGATGGCATTAAAGgtaagtgggtctttggtcaatcggattcaattagatctttacatgcatcaagtttagttgactacattgttcttgccttattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG