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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtatttcatctgatgttcccaatgttctttctttctttttttaaagttgttgatctaggtccttatcttgttctcctttgttag

Basic information

species Vitis vinifera
transcript Vv05s0020g04770.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32267991|gb|CD717150.1|CD717150
EST:     TGTATGACAAATTAGATTCTGCATACGCTACTGAGGACGAGCACACCGAG                         GAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGACGAAAATGATGGC
genomic: TGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtattt ... cctttgttagGAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
EST: gi|110700202|gb|EE077974.1|EE077974
EST:     TGTATGACAAATTAGATTCTGCATACGCTACTGAGGACGAGCACACTGAG                         GAGGAATGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
genomic: TGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtattt ... cctttgttagGAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
EST: gi|110419463|gb|EC985692.1|EC985692
EST:     TGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAG                         GAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
genomic: TGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtattt ... cctttgttagGAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
EST: gi|110728229|gb|EE103616.1|EE103616
EST:     TGTATGACAAATTAGATTCTGCATACGCTACTGAGGACGAGCACACTGAN                         GAGGAAGGAGATGANGCATATCTTGAAACCTATGCCGATGAAAATGATGGC
genomic: TGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtattt ... cctttgttagGAGGAAGGAGATGAGGCATATCTTGAAACCTATGCCGATGAAAATGATGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCAAATGGACATTGTGAAAGACCATGGAGATGAGGAGCTGTATGACAAATTAGATTCTGCATACGCTACTGAGGATGAGCACACCGAGgttcgtatttcatctgatgttcccaatgttctttctttctttttttaaagttgttgatctaggtccttatcttgttctcctttgttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG