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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCAgtaagtgtttattatcctttctgtagggctagtacatatcatttttcaactttttttgactggaatccagcctctaattgattttcttttattttttccc...

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 7
ATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCAgtaagtgtttattatccttt---ctgtagggctagtacatatcattt-ttcaactttttttgactggaatccagcctctaattgattttcttttattttttccc
|||||||||||||| |||||||| ||||||||  |||||||||| || || || || || |||||||||  | || ||| || |  ||   ||    ||| |      |  ||||||| | ||| || || ||  ||   | | ||    |||    || | ||   |   |  |||
ATAACTTCAACAGCTGGTGGTGGCACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattgacaatatattatattgttgaagatctctatatcatgtattctacattattacac--aactacaatagctacc--atgtgctagaaaggtgcccc

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 6
ATAACTTCAACAGCAGGTGGTGGGACTTTGACCTTGGAATTTGGGGTGCTTAGCCGCTTAACTAATGATCCCAgtaagtgtttattatcctttctgtagggctagtacatat---catttttcaactttttttgactggaatccagcctctaattgattttcttttattttttccc
|||||||||||||| ||||||||||| |||||  | |||||||| || || ||||| || || |||||||| ||| |||  ||   ||  |  || |||| ||| |  |      |||| | |||    |      |    ||         ||  ||   ||    ||||     
ATAACTTCAACAGCTGGTGGTGGGACCTTGACTCTTGAATTTGGAGTTCTAAGCCGATTGACAAATGATCCTAgtgagt--ttgccattttccctttaggtctattgaaagcatacattatgcaaggaatccaagttattgtctttgagaagatatatgaactaaagttttgaat-