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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaattggttcttataccgccagttcaaaatatcagtacaatgtgtttgaaatactggctcctatgatccctcgggtgcatatatttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g04630.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G172410_T01 (Zea mays), 5'ss of exon 7
ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaattggttcttataccgccagttcaaaatatcagtacaa-----tgtgtttgaaa--tactggctcctatg-atccc-tcgggtgcatatatttgcag-------------------
||||| ||||||||||| |||||||||||||||  |  ||| |||| ||  | |||||||| ||||| |   |  | ||||||||    |||||||| |||||||      |       |   ||    || | | | ||      |   ||| |    | ||     ||||| ||||  ||  |||| | |  |||                      
ATATCATTATTTGTGGAGTCAATAGTCATCTGATGTCTATATTGAACCAATTGAATAAGTACCATGAATCATCAATTCGCTTAGGTTTAGCTACAGCAAGgtaatgaaggatggcgtatcattttggttatgttaattcacccttttacttttaagggttgctaagatctatgtatcctatctagtgcctctgattgttttcttatgaacaatgtcaag

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G32300.1 (Glycine max), 5'ss of exon 8
ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaattggttcttataccgccagttcaaaatatcagtacaatgtgtttgaaatactggctcctatgatccctcgggtgcatatatttgcag
||||| |||| ||||| || |||||||||||  |||||||| | |||||| ||||||||||||| || |||||||| | ||||||||| ||||||||||||||| ||||||  | |  |    |||  | || |  ||   ||||||  || | |||||| ||   ||        | ||| | | |||||
ATATCATTATCTGTGGGATGAATAGTCATCTTCCCTTCATATTAAAGCAGTTAAATAAGTATCAGGAATTTGCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggttcagacaaggtagtttcccattacccttatcttgtgttctaatttctggcttctgcaatatgcttttt-catctctatgcag

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 8
ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaattggttcttataccgccagttcaaaatatcagtacaatgtgtttgaaatactggctcctatgatccctcgggtgcatatatttgcag
||||  |||| ||||| || |||||||||||  |||||||| | |||||| |||||||||||||||| ||| |||| | ||||||||| ||||||||||||||| ||||||  | |  |    |||  | |  |  ||   ||||||   | | |||||| ||   ||        | ||| | |  ||||
ATATTATTATCTGTGGGATGAATAGTCATCTTCCCTTCATATTAAAGCAGTTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggttcagacaaggtagtttcccattgcccttatcttgtgttctgatttctggcttctgcaatatgcttttt-catctctacgcag

upper sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 8
ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaatt-ggttcttataccgccagttcaaaatatcagtacaatgtgtttgaaatactggctcctatgatccctcgggtgcatatatttgcag
||||| | ||||||||||| || ||||||||  | |||||||| ||||| || || |  |||||||||  |||||| |||||||| || || ||||||||||| || |||   | ||       |  ||  |||   | |  |    ||||  ||  |     ||   | ||| |     | ||  || |||
ATATCATCATTTGTGGAATAAACAGTCATCTACCTTTCATACTAAAGCAACTGAACAGTTATCATGAGCATGCTGTCCGCTTAGGTACCGCCACAGCTAGgtattttggtctctctatatatcttaaaatttatttctccgcttatcttgactta--gataattacttttccttgt---tacatgctttcag