Sequence
atgc intronic sequence ATGC exonic sequenceCTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaacatcagctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcacatcaccagcccaaccctaagacccaaaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G24080.1 (Glycine max), 5'ss of exon 9
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaa-acatcagctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcaca--tcaccagcccaaccctaagacccaaaaaa
||| ||||||||||| || ||||||| ||||||||| || |||| || || || ||| ||||||||||| ||||| || ||||||||||| |||||||||||| | || |||| | ||| | | | | | || | | ||| | || | | | | || ||| |
CTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTGTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTGGTCCGGACTGATTTGGATACATTGgtatgaggaaataagcttaaattcccaccaaggaaaaagtgcaa-tgaattaatttattataaatgtatataggttaaagatgcatgaataaattttaggg--
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 8
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaacatcag-ctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcacatcaccagcccaaccctaagacccaaaaaa
||| ||||||||| | || | ||||||||||||||| || |||| || || |||| ||| ||||||||||| || ||||| || ||| |||| |||||||||||| || || || | ||||| || | | || | | || || | | | | |||| |
CTTAGCTGATGAGGCAGCTGTTCTACTGCTTTACTCATTGTTGCAAGGGAATTCTGCCTTTCTGGAGTATGTATTAGTGCGGACAGATCTGGATACATTGgtatgaggcagcaaacttaagtttctcctattaaaaacgtgggaatagattaattacttttatataagtcaagtagaattttagat-taagttatgttgag
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 8
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaa-acatcagctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcaca--tcaccagcccaaccctaagacccaaaaaa
||| ||||||||||| || ||||||| ||||||||| | |||| || || || ||| ||||||||||| || || || ||||||||||| |||||||||||| | || | || | ||| || | | | | || | | ||| | || | | | || ||| |
CTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTTTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTAGTCCGGACTGATTTGGATACATTGgtatgaggaaattaacttaaattcctcccaaggaaaaaatggaa-tgaattaatttattataaatgtgtatgggttaaagatgcatgtataaattttaggg--
upper sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaacatcagctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcacatcaccagcccaaccctaagacccaaaaaa-----------------------------------------------------------------
|| ||||||||| ||| || | || || |||||| || |||| || || || ||||| ||||||||| |||||||||||||||||||| || ||||||||| ||| | | | | | || || | | | | | | | | | | ||| ||| | | ||
TTTAGCTGATGAGGGCGCCGTCTTGCTCCTCTACTCATTGTTGCAAGGGAATTCCGACTTTAAGGAGTATGTGTTGGTGCGAACTGATTTGGATACTTTGgtatgattcataaatgcctctcaataagttccatgggtctatttcattcttttgttccattgtccttaaaagtagaaatccattcctctgttttactaacccttaagatgaagtccttatagtttcatattaatgatctatgctttaatattttttgatggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714238|gb|FC064147.1|FC064147EST: ACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTG TTGATGCCCATTTTGGAGACCTTGTATAATGCGTCAAGGAGGACATCTAAT
genomic: ACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaaca ... aaatcaacagTTGATGCCCATTTTGGAGACCTTGTATAATGCGTCAAGGAGGACATCTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGGCTGATGAGACTGCCATCCTACTGCTTTACTCACTGGTGCATGGAAACTCTGACTTCCTGGAGTATGTTTTGGTGCGAACTGATTTGGACACATTGgtatgaaacatcagctcatatttctgtctttgttgagctaaaaaccagtccccatatattccattctcacatcaccagcccaaccctaagacccaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaaaa