1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGTTGTGGCTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATGgtatagtaactaatacactcaaagtgaccttttctttttcaaggaatcttccacttcccctgtttggagcacaagaaaatccatcacttttctacaactt...
species | Vitis vinifera |
transcript | Vv05s0020g03200.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATG GCATCAGATTCGCEST: gi|351022726|gb|FQ428635.1|FQ428635
genomic: CTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATGgtatagtaac ... caaatggcagGCATCAGATTCGC
EST: CTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATG GCATCCGATTCGCCATTTTTGCTEST: gi|349815985|gb|FQ403626.1|FQ403626
genomic: CTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATGgtatagtaac ... caaatggcagGCATCAGATTCGCCATTTTTGCT
EST: CTTATTCATCCCATATTCCTTCTTTTGCTGATATTTGGGGATGGGTTATG GCATCAGATTCG
genomic: CTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATGgtatagtaac ... caaatggcagGCATCAGATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTTGTGGCTTATTCAGCCCATATTCCTTCCTTTGCTGATATTTGGGGATGGGTTATGgtatagtaactaatacactcaaagtgaccttttctttttcaaggaatcttccacttcccctgtttggagcacaagaaaatccatcacttttctacaactt
- - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa