1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGACAGTTTTTCCTGGTAAATATGCACTGGAAATGTCTGCTGTGATTTATAAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaagagctgcacacaaagaatattgtccattccattgctctttgttgaaatcaattttaatttgatctatttcctttcag
species | Vitis vinifera |
transcript | Vv05s0020g03170.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATEST: gi|352789730|gb|FQ478545.1|FQ478545
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATEST: gi|351039852|gb|FQ464890.1|FQ464890
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATEST: gi|351040603|gb|FQ438147.1|FQ438147
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATEST: gi|349831061|gb|FQ420731.1|FQ420731
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGATEST: gi|161713028|gb|FC062450.1|FC062450
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
EST: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAG AGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
genomic: AAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaa ... ttcctttcagAGGTGTAGCAGTTGAGGACCCAAACTACCGCCATGGGCTCAGGCTTCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACAGTTTTTCCTGGTAAATATGCACTGGAAATGTCTGCTGTGATTTATAAGAACTGGAATTTCACTGAGCAGGGGCTTCCTGCTGATTTACTTAAGAGgtaatccgaagagctgcacacaaagaatattgtccattccattgctctttgttgaaatcaattttaatttgatctatttcctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT