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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTACAAAATAATAATCTGACTGGTCAAGTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAAgtgagtgtgaccatccacatgtatattatccacatctcattcgttgccattttagcaaattaattgatttgatttgattgttag

Basic information

species Vitis vinifera
transcript Vv05s0020g03030.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32267555|gb|CD716518.1|CD716518
EST:     ACTGGTCAAGTTCCAAATAGCCTTACAGGANAACCTGGACTGAACCTTAA                         GATTTTTCCTG
genomic: ACTGGTCAAGTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAAgtgagtgtga ... tgattgttagGATTTTTCCTG
EST: gi|110715874|gb|EE094419.1|EE094419
EST:     ACTGGTCAAGTTCCAA-TAGCCTTACAGGAAAACCTGGACTGGACCTTAA                         AAATTTTCCTGGGAATAATTTTTCATCATCACCAACTTCAAGA-CTTAAAC
genomic: ACTGGTCAAGTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAAgtgagtgtga ... tgattgttagGATTTTTCCTGGGAATAATTTTTCATCATCACCACCTTCAGGAGCTTAAAC
EST: gi|110717731|gb|EE093842.1|EE093842
EST:     CTGGGTCA-GTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAA                         GATTTTTCCTGGGAATAATTTTTCATCATCACCACCTTCCAG-AGCTTAAA
genomic: CTGG-TCAAGTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAAgtgagtgtga ... tgattgttagGATTTTTCCTGGGAATAATTTTTCATCATCACCACCTTC-AGGAGCTTAAA
EST: gi|110717898|gb|EE094155.1|EE094155
EST:     ACTGGTCAAGTTCCAAATAGCCTTACAGGAAAACCTGNACTGAACCTTAA                         GATTTTTCCTGGGAATA-TTTTTCATCATCACCACCCTCAGGAGCTTAAAC
genomic: ACTGGTCAAGTTCCAAATAGCCTTACAGGAAAACCTGGACTGAACCTTAAgtgagtgtga ... tgattgttagGATTTTTCCTGGGAATAATTTTTCATCATCACCACCTTCAGGAGCTTAAAC