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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGgtatgctctatgcacatttaaacatttcttatttcattttacttttcattcaagtggtgattagattgtagacctctgcgtgatgaacttcattttcttt...

Basic information

species Vitis vinifera
transcript Vv05s0020g02960.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G097289_T03 (Zea mays), 5'ss of exon 3
AAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGgtatgctctatgcacatttaaacatttcttatttcattttacttttcattcaagtg---gtgattagattgtagacctctgcgtgatgaacttcattttcttt
|    ||  | |||||| || ||||||| ||  ||||||||||||||||||||||  | |||||||| || ||||| |||||  | || || || ||||||||| | || |  |  ||  ||   || ||| |  ||| |   |||   | |  ||   |   |||  |  |  |  |     ||||   |   | |  ||| 
AGAAGTTCCTAAAGAAAGTTCACTGGCATTATTTGATTGTTGATGAAGGACATCGTCTGAAAAATCATGAATGTGCTCTTGCTCGCACACTAGTTTCAGGgtatacgcttt--attttacaatcctttttactgtattatggctttggatgacatgtatgcacttaattattgtatgtggctctgattgccagtaatggctt-

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G39630.1 (Glycine max), 5'ss of exon 6
AAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGgtatg-ctctatgc-acatttaaacatttcttatttcattttactt-ttcattcaagtggtgattagattgtagacctctgcgtgatgaacttcattttcttt
|||||||| | ||||||||| | ||| | ||| ||||||| |||||||| |||||||| ||||||||||||| ||| || ||||| ||  | | |   |||||||  ||||    | || ||   ||  |  |  | | || |  | || | |    |      | | || | ||  ||    |  |  | ||          
AAGCATTTCTCAAGAAAATTCAATGGAAATACTTGATTGTGGATGAAGGGCATCGGTTGAAAAATCACGAGTCTGCTCTGGCAAGAACCTTGGACAATGGgtatgattctacatgatatatatcgatgacgcagattaattaatgtgtttacttccctaaattcttggttat-gatatccatttattttatttagaacaac--

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G19310.1 (Arabidopsis thaliana), 5'ss of exon 8
AAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGgtatgctctatgcacatt-taaacatttcttatttcattttacttttcattcaagtggtgattagattgtagacctctgcgtgatgaacttcattttcttt--
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | || || || || ||||| || |||| |||||| |   | ||||||| |   || |  ||       | | | | |  | | ||  |    |   |  | || |||||   |     | | ||  || | ||| ||    | |  
AAGCATTTTTGAAGAAAATTGACTGGAACTACATGATTGTTGATGAAGGACATCGTCTGAAGAACCATGAATGTGCTCTCGCAAAGACTCTAGGAACTGGgtatgtttc-tgtatgttactctggtctttgagtagactgtatctagtttcttaaagatgtttagac-atgcctttttacgc-attagcttgatgaagtctga

upper sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G06010.1 (Arabidopsis thaliana), 5'ss of exon 8
AAGCATTTTTGAAGAAAATTGACTGGCACTACATGATTGTTGATGAAGGACATCGGTTAAAAAATCACGAGTGTGCCCTTGCAAGGACTCTTGTCTCAGGgtatg-ctctatgcacatttaaacatttcttatttcattttacttttcattcaagtggtgattagattgtagacctctgcgtgatgaacttcattttcttt
|||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| | || || ||||| | ||| || |||| |||| |  |  |||||||   ||||||   ||| |      |    | |  ||  |  |    |   |  |  || ||  |    | |  | | || |||| |             
AAGCATTTTTAAAGAAAATTGAGTGGTACTACATGATTGTTGATGAAGGACATCGGCTGAAGAACCACGAATCTGCTCTAGCAAAGACTTTATTAACAGGgtacatctctatattcatctg-----tctgaagtgaatgatgttggctaacta--ttatgtttctaacaaaaatttatccgggatgcag------------