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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtcttagcaattatctatttgacatactcttatccattttttttggtatcacctgctgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag

Basic information

species Vitis vinifera
transcript Vv05s0020g02530.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os05g05160.1 (Oryza sativa), 5'ss of exon 8
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgta-----tccgtcttagcaattatctatttgacatactcttatccattttttttggtatcacctgctgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag
| || ||||| || || || || || || ||||| || || || || |  || ||  |||| |  |||||||||||||||||||||   ||||||||||||||     |   | |||     | | ||| ||||||    | | | ||     ||| || | || | ||  | | | | |||  | || |  |  | ||||        ||||    ||||
CAGTAGACCATTTTAAAAAACAGTTTGCATACCTTGAAGAACATTATGCCAAGGGATCAACAGCAGCTCCACCTGAGAGACAACATAACTCATTACCAAGgtaagatatttattttattttat-tttatatgacatggattaaccgatggaacttg-tagctccagttgaatat-atacttgattcttgactat-ctacta--------ttgtatcgacag

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G02220.1 (Glycine max), 5'ss of exon 8
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatcc--gtcttagcaattatct-------atttgacatactc--ttatccatt-ttttttggtatcacctgc-tgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag------
| || || || |||||||||||||| || || || |||||||| || ||||| |||| ||||||| ||||||| ||||| ||||||||||||||||| |||||| |   | ||   || | | |       || || | |  |   ||| | |||  | |||  | |   | ||   ||  |  |  ||   | | ||     |||    ||    |||| || |  |       
CGGTGGATCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCCGAGAGGCAACATGCATCATTACCCAGgtattctaattttgctaaatgtttctggataatgtggcttttttctttagctattgctcttttatcttgtcagcacacccattcatcttctct-tgaactgcaccaactgtgctgatttgagactttaaatgcag

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G10940.1 (Glycine max), 5'ss of exon 8
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccg---tcttagcaattatctatttgacatactcttatccattttttttggtatcacctgctgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag-----------------------------
|||| || || |||||||| ||||| || || || |||||||| ||||| || || | |||||||||||| |||||||| ||||||||||||||||| ||||||||    | |  |  | ||| | |||||  |  || | ||   ||| |    | |    |  | | ||||||| |    | |  |  |  ||  | ||     ||||  ||| |                               
CTGTGGATCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttat-cttgtcaaattccaatatagaaaaatccctttatctg-ctttggaattgccaactctgctgatttgttgctgtgcatgcag

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G28120.1 (Glycine max), 5'ss of exon 8
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatcc--gtcttagcaattatctatttgacatactcttatccattttttttggtatcacctgctgcctgtcaaagttgggtgttaatcaggccactaatgaaattttgtgattacag-----------------------------
|||| ||||| |||||||| ||||| || || || |||||||| ||||| || || |  |||||| |||| |||||||| ||||||||||||||||||||||||||   | |  |  | ||| | ||  |  |  || | ||   |||||    | |    |  | | ||||||| |    | |  |  |  ||  | ||     ||||  ||| |                               
CTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTACGGCAAAGGGGGGACTGTTACTCCCCCTGAGAGGCAACATGCATCATTACCAAGgtatcctaatttctgttactattttttgaaattgttcctttcttctttttccattgttcttttat-cttgtcaaattccaatatagaataacccctttatttg-ctttggaattgccaacttcgctgatttgttgctgtacatgcag

upper sequence: Vv05s0020g02530.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G38510.1 (Glycine max), 5'ss of exon 7
CTGTTGACCAGTTCAAGAAGCAATTCGCTTACCTCGAGGAGCACTACGGAAATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccg--tcttagcaattatctatttgacata---ctcttatccattttttttggtatcacctgctgcctgtcaa--agttgggtgtt---aatcaggccactaatgaaattttgtgattacag-------------
|||| ||||| |||||||| ||||| || || || |||||||| || ||||| | || ||||||| ||||||| ||||| ||||| ||||||||||| |||||| ||  | ||   || | | | |   | ||    || || ||  |   | ||| | |    |  || | |   |    || | | |    ||     |||    ||    |||| || |  ||             
CTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTATGGAAAAGCTGGAACTGTTACTCCACCCGAGAGGCAACACGCATCATTACCTAGgtattcgaattttgttaaatgtttctggaaaatgtggcttttttctttagctattgctcttttatcttgtcagcacacccattcgttctcttgaactgcaccaactgtgctgatttgagagttgagactgtaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863134|gb|DT012189.1|DT012189
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCGAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|294964202|gb|GW838005.1|GW838005
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|110690752|gb|EE068184.1|EE068184
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|161719505|gb|FC067398.1|FC067398
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|33404616|gb|CF210243.1|CF210243
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|156735426|gb|EV239547.1|EV239547
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|71860512|gb|DT009567.1|DT009567
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCGAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|37188545|gb|CF607894.1|CF607894
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCTAG                         GCCATGTGTATTATAT
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATAT
EST: gi|110730439|gb|EE107523.1|EE107523
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
EST: gi|110387017|gb|EC951656.1|EC951656
EST:     AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAG                         GCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC
genomic: AATGGTGCAACTGTTGCTCCACCTGAGAGACAACATGCATCATTACCAAGgtatccgtct ... gtgattacagGCCATGTGTATTATATTCAGATAATTCATTACATAATTCAGCAGAGGTCGC