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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaagcagatgcacccaagacttcataaatgaccaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g01880.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 7
GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaa-gcagatgcacccaagact-tcataaatg-accaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag
||| ||| | |||||  ||||||||||||| ||||||||||||||||| ||||| |  ||||| |||  | |   | ||| ||   ||  | | ||| |   || ||| |||| | |  | || ||  |    || || |    | | | |||   |  ||   |  |  | | |  |  || ||| ||  ||  || | | |                                     
GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACGAGTTTACTGgtgagttctatcatagtaaaaaaccgtatatggaaataatactatcattactttatcatgtttacc--tacctgtgt--agtttatatatttcctttgattctgaaagcttaatgatttct-atctttgcatttacag-------------------------------------

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 7
GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaagcagatgcacccaagact-tcataaatg-accaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag
||| ||| | |||||  ||||||||||||| ||||||||||||||||| |||||    ||||| |||  | |   | ||| ||   |||  | ||| |   || ||| |||| | |  | || ||  |   |    | |  |  || | | ||  ||| |   ||| ||    |   ||   | ||  | | |                                              
GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttctatcatagta---aaacaatatggaaataatactatcattactttatcatgtttacctacctgtgtagtttatatatttcctttgatttctatctttgcctttgca---tttgcatttacag--------------------------------------------

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G28660.1 (Glycine max), 5'ss of exon 8
GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaagcagatg-cacccaagacttcataaatgaccaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag
||| ||| | ||||| |||||| | ||||| |||||||| |||||||||||||||   ||||||||||   |    |  | |  |    | | |||  |     ||  |   |||  |  | || |  || |||| |   | ||   | |||| || |   | ||  ||                                                                     
GCAAGAAGTGATGGATTTGGTTTACAAAAGTGGGAAATTTAGTAAAAAGTTTGAGAAATTTACAGgtaa--tagcaaccattttgatttgtaaatggtaggtttgagcttgaaaaccagta-gtaattaagtaaccaa--tgaaccataatcatttatgttgcatggtac--------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34415661|gb|CF414415.1|CF414415
EST:     TTGGTTAATAAAAGTGGGAAATTCGGTAAAAAGTNTGAGGCTTTTTACAG                         GAACTAGTGATCCTTTGGGTAAGAGATTAAACAACTCAAAAACTCGTGAG
genomic: TTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGC-TTTTACAGgtatgcttct ... ttctttgcagGAACTAGTGATCCTTTGGGTAAGAGATTAAACAACTCAAAAACTCGTGAG
EST: gi|34320535|gb|CF373289.1|CF373289
EST:     CTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAG                         GAACTAGTGATCCTTTGGGTAAGAGATTAAACAACTCAAAAACTCGTGAGG
genomic: CTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttct ... ttctttgcagGAACTAGTGATCCTTTGGGTAAGAGATTAAACAACTCAAAAACTCGTGAGG