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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTGCTATTCGGTGGGTCTTCGTGATAATCATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttgtagtcttataggttattcaactatttctaaaaagttgaaaagttggtactgttctgacacttccacactgtgtttccctag

Basic information

species Vitis vinifera
transcript Vv05s0020g01800.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360502|gb|EC923659.1|EC923659
EST:     ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG                         TATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
EST: gi|161721536|gb|FC069746.1|FC069746
EST:     ATTCGTGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG                         TATCTTTTTGACTCACTCAAGGATACCACAGTCCTGGTTTGTGGACACACG
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA
EST: gi|161716059|gb|FC067162.1|FC067162
EST:     ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAG                         TATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACCCA
genomic: ATTCATGTGTCGAGAACTCCATGCGGCATCACTGTCCCATATGTTATGAGgtttgtgttg ... gtttccctagTATCTTTTTGACTCACTCAAGGATACCACAGTCATGGTTTGTGGACACACA