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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGGAAAGGCCCTCTTCAAGGCACATGTAGAAGGCCAACTTAAGgtaaatattgccattgagtaattttcttttctaatgttaaatgttgtggttcacaagaatcaactgattgatggcatccatacag

Basic information

species Vitis vinifera
transcript Vv05s0020g00880.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 7
GCTGTTGGAAAGGCCCTCTTCAAGGCACATGTAGAAGGCCAACTTAAGgtaaatattgccattgagtaattttcttttctaatgt-taaatgttgtggttcacaagaatcaactgattgatggcatccatacag
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GCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAGgtactcttag--gttaatcatattataattatgatatatgactattacctttttctgaaaacttctt-tagctggttgaaatgtag