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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAGgtaggactaaattcaacaactgatatttttggttaattgacatttcagactgatttttttctatgttgtaccatggggttgctatccttctaccaattcaattactcctgattggcagacactgaacagaatgtatttacaaaacttgtgctttttatgtag

Basic information

species Vitis vinifera
transcript Vv05s0020g00440.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G14520.1 (Glycine max), 5'ss of exon 13
GTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAGgtaggactaaattcaacaactgatatttttggttaattgacatttcagactgatttttttctatgttgtaccatggggttgctatccttctaccaattcaattactcctgattggcagacactgaacagaatgtatttacaaaacttgtgctttttatgtag
|| ||| | |||||||| |||||||| |||||  |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| |||||||   | |||| |  ||   | ||||   |||   | |  ||  |||    |  | |   |  |  | |||      |   ||  | |||| |||| |                                                              
GTTATAATATGTGGTCTAATTGGAATTCCTCCGTCAAATGGTGTCATTCCACAATCTCCAGTGCATACCAAAAGTTTAGCTACATTGAAGCACCAGgtagacattaatt-acgaatgcagatttcctgttctctcattttatagaactttactgtgacaaatgttgccaatacactttcat--tactacaaatttaggg-----------------------------------------------------------

upper sequence: Vv05s0020g00440.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G03600.1 (Glycine max), 5'ss of exon 11
GTCATATTGTGTGGTCTCATTGGAATCCCTCCAGCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTGGCTACACTTAAGCATCAGgtaggactaaattcaacaactg-atatttttggttaattgacatttcaga--ctgatttttttctatgttg----taccatggggttgctat-ccttctaccaattcaattactcctgatt----ggcagacactgaacagaatgtatttacaaaacttgtgctttttatgtag------------------------
|| ||| | || ||||| |||||||| || ||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||  | ||||  |||| || || |||   |||  ||    ||  |||   | | | |  |  || |||    ||| ||     | |||  |  | ||  |   | |  |||    |       | ||| ||| || | |   |  ||||||      ||||  |    |                          
GTTATAATATGCGGTCTAATTGGAATTCCCCCGTCAAATGGTGTCATTCCACAATCTCCAATGCATACCAAAAGTTTAGCTACATTGAAGCACCAGgtaggcattaatt--acaattgcatgtttcatgttctttctttttatagagctttactgtcataaattttgccaatacaattccactactacactctttagtagacctagaactttaaagaagaaagtagaaacttaatacataatgattacaagtgcgctgctactatcatcatacttacatttggttgatttgcag