1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCATTGGGTGGTAAAACCTTTAAAATGAAGTTTGGTCACCATGGTGGAAATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcacctagacctctgtttagctattaatgtttgcaagaacatctaattcctctaattttactttcttcagttccctgtaaattgattcttctgt...
species | Vitis vinifera |
transcript | Vv04s0044g00550.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|30132674|gb|CB918013.1|CB918013
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|110693364|gb|EE069531.1|EE069531
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|161717391|gb|FC067542.1|FC067542
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGCCCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|110402447|gb|EC960203.1|EC960203
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|29783438|gb|CB349597.2|CB349597
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGGATCCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTGEST: gi|29783487|gb|CB349677.2|CB349677
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
EST: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAG AATCATAACTATGCAGTAGACCCTGCATCCCTGCCTGAGGGTGTGGAAGTG
genomic: ATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcac ... tgtgtggcagAATCATAACTATGCAGTAGACCCTGCATCACTGCCTGAGGGTGTGGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCATTGGGTGGTAAAACCTTTAAAATGAAGTTTGGTCACCATGGTGGAAATCATCCAGTTCGTAACCTTCGGAGTGGTCGCGTTGAGATCAGTGCTCAGgtgtgttcacctagacctctgtttagctattaatgtttgcaagaacatctaattcctctaattttactttcttcagttccctgtaaattgattcttctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga