Sequence
atgc intronic sequence ATGC exonic sequenceGGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaatggttctataattccaaggttatataactctctactagtacacttcaaatattgtgcttttgctagattttgttttgtcattttttatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G39970.1 (Glycine max), 5'ss of exon 9
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaatggttctataattccaaggttatataactctctactagtacacttcaaatattgtgcttttgctagattttgttttgtcattttttatttt-----
||| | | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || | | || | | | | ||| | ||| | ||| || || | | || | || || || || ||| | ||
----------------------------------------------GAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGgta----aattgtagctttaacccttgatatttcacctcccctctactttccttttcat-ttcttcattaattgtgttatgattgttcccctttaaacttttttt
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G46250.1 (Glycine max), 5'ss of exon 9
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaatggttctataattccaaggttatataactctctactagtacacttcaaatattgtgcttttgctagattttgttttgtcattttttatttt-----
| ||| | | ||| |||||| | ||||| || ||| | | |||||||| |||||||||||||||||||| |||||||||||||||| ||| ||| | | || | | | | || | || | ||| || || | | || | |||||| || || ||| |
CAATCTGACAATCTGACCAAAGAAGGGACATGTAACCCAATGACAGGAGACACTGTTTGGGTTGAAGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGgta----aattgttgctttaacccttgatatttcacttcccctgtactttccttttcat-ttcttcattgattgtattttgattgatcccctttaaaaaaaaaac
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 8
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaat---ggttctataattccaaggttat--ataactctctactagtacact-------tcaaatattgtgcttttgctagattttgttttgtcattttttatttt----------
||||| | | ||| | | ||| | | ||||||||||| ||||| ||||||||||| ||||| |||||||||||| ||| ||| | || | |||| | ||| | | | | | | || | | | | ||| | | | | | | | || |
--------------GCTCAACCTGCG----CCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctattatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatag
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G01920.2 (Arabidopsis thaliana), 5'ss of exon 8
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaa---tggttctataattccaaggttat--ataactctctactagtacact-------tcaaatattgtgcttttgctagattttgttttgtcattttttatttt----------
||| || | | | | | ||| | | ||| | | ||||||||||| ||||| ||||||||||| ||||| |||||||||||| || | ||| | || | |||| | ||| | | | | | | || | | | | ||| | | | | | | | || |
-------AAATTCAGGCTCA---ACCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctattatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542617|gb|CF510849.1|CF510849EST: AATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATG ATTTGAAGGCAGCAGCAACTTGGGAAGTTGACAACACAGGATTGAAAACTG
genomic: AATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaat ... tgtctttcagATTTGAAGGCAGCAGCAACTTGGGAAGTTGACAACACAGGATTGAAAACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaatggttctataattccaaggttatataactctctactagtacacttcaaatattgtgcttttgctagattttgttttgtcattttttatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctac