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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAGGAGATGCCTCTGAGATTCCGATTGATATTTCTGTTCTGTCCAACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggttttctttgtgagatctttgtggcagaatatacataattgttttcattactggtcaaaaaatgatgtctcctgctatag

Basic information

species Vitis vinifera
transcript Vv04s0023g03420.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 8
AGAAGGAGGAGATGCCTCTGAGATTCCGATTGATATTTCTGTTCTGTCCAACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggttttctttgtgagatctttgtggcagaatatacataattgttttcattactggt--caaaaaatgatgtctcctgctatag----
|||||||||||| || |||||||| ||  ||||||| |||||  |||||||||||||| | |||||||||||||| |  || || || |||||| | ||||||        ||||||       ||   |  |   ||||||  | || ||| ||   ||  | ||  ||| ||  | ||   ||      
AGAAGGAGGAGAAGCATCTGAGATCCCTGTTGATATATCTGTATTGTCCAACATGCGTCAGTTTGTCAAGTACAGCCGTTTTAAGCAATTTGCTCTGAGGgtaaa-----ttttgtg-------tgcaactaatcttacatatcttttctcactatatgttcctaatgatgttggtttctttcatgctcag

upper sequence: Vv04s0023g03420.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGGAGGAGATGCCTCTGAGATTCCGATTGATATTTCTGTTCTGTCCAACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggttttctttgtgagatctttgtggcaga-atatacataattgttttcattactggtcaaaaaatgatgtctcctgctatag
||||||||||||||| ||||||||||| || || || |||||||||  |||||||||| | ||||| || |  || | | | || || || ||||||||||||    |      | ||||| | |||  ||      |   |   ||| ||  ||  |  | ||  | | |||  |  || | |||
AGAAGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACAACATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCAATTCGCTTTAAGGgtaa---tcaagaagagagatttgtgtttcatttgagtttcttgatgtgtttgtttttattaaatgagttatgctttttggtctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814163|gb|FQ414782.1|FQ414782
EST:     ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG                         GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
EST: gi|161714014|gb|FC064089.1|FC064089
EST:     ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG                         GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCT
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCT
EST: gi|30255725|gb|CB971857.1|CB971857
EST:     ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGG                         GCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA
genomic: ACATGCGTGAATTTGTCAAGTACAGTCACTTGAAACAGTTTGCTTTAAGGgtatggtttt ... cctgctatagGCATTGGCGAGCACGCTTGATGATGAGGAACTGGCTGATCTTAGGGATCAA