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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag

Basic information

species Vitis vinifera
transcript Vv04s0023g02940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 8
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag
|||    || ||||||||||||||| || | ||||| || || || ||||| || |||||||| |||||||||||| | | | |   |      |   ||| |  |  || || | ||  | |  ||   ||  ||| ||||  ||||                    
GTACATCCTTCAATGGGAGTCTAAGCATATAATTGCAGTGAGTACAGCAATACAGGATTGGCTGACATCAAgtaatatttgtagttttgcccatttacactatc-agcaaaaacttctaattta-cactgtt-atttatgat--tcag--------------------

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G17160.1 (Glycine max), 5'ss of exon 6
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag
||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||| |   | |  | ||||  |       | | |||| | |  |   |    | ||   |||  ||   ||| | |||| ||||  |||
GTATGCACTGCAGTGGGAGTCTAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttaggg-tgcttataaaaccaagttattagtttattattagtgct-gtgaatgacgttagtattgctgtgacttgcatcag

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 8
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag
||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||| |   | |  | ||||  |     | | | || | | |  | | |    | ||   |||| ||   ||| | |||| ||||  |||
GTATGCACTGCAGTGGGAGTCCAAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattggtttaggttttaggg-tgcttataaaactaagttatcagtttattagtagtgct-gtgaatgatgttagtattgctgtgacttgcatcag

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatt--tgtttgtgatcttcagatttccgtgaattgctgcag
|||||| || || ||||||||  |||||||||||||||| ||||||||||| |||||||||||||| ||||||||||  ||| |     ||| ||  | ||| | |     | ||| | || |   |  | |  |||   |||| |||| ||| | |||| ||    |||
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttagg--ctataact--ttctgataaagcgaagttattattttataagtagtgctgtgaatgatgttcatattgctgtgacttcaatcag

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataat-tactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag
|||||||||  | |||||||| ||||||||  ||||  | ||||||||||| || ||||||||||| |||||||||| |||| ||   ||  | ||||| |  || |  ||  | || |    | |     | | |   || |    | |||   || |  ||||  ||
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattcca-ggatgctagtacttttgtatggtatatttgagtagagatgtatatgattggtgccaatattgttgtcatatgctttag

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 7
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataat-tactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag
||||||||| || |||||||| ||||||||  || |  | ||||||||||| || ||||||||| | |||||||||| |||| ||   ||  ||||| | |  || |  ||| | || |    | |     | | |   || |    | |||   ||||  | ||  ||
GTATGCACTGCAGTGGGAGTCCAAGAATCTATTTTCCCTGAGCACTGCAATTCAGGATTGGCTTTCTTCAAgtaattggttttgattcca-ggctgccagtacttttgtatagtatatttaagtagagatgtatatgattggtgccaatattgttgtgatattctttag

upper sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatt-tgtttggaactcatagctgctactgtttattaataattactgttatggcatca-tttgtttgt-gatcttcagatttccgtgaa-ttgctgcag
|||  |  | |||||||| ||  ||||| | ||||| || ||||||||||| || ||||||||||| |||||||||  | | | |   |      | |   |    ||  | |  ||   || ||  ||   | |     | |||  | | |||  | |||| ||| |||||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag