Sequence
atgc intronic sequence ATGC exonic sequenceACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g40490.1 (Oryza sativa), 5'ss of exon 9
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaacccc--ccatcccacacacactgaagaaat-cttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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GCTGATCGAATACCGAGCACATCCATTCTGGATGCAAAAGTACTGTCCTTCCCATGAAGATGATGGCACTCCTAGGTGTTGCAGTTGTGAAAGAATGGAGgtcagt-gcagggatctagatcctcaatgagaccagtttccccagcttgtcacttcttgttcctggaaagaaaccagccagttttga---ctaccatttggaaa--------------------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g08400.1 (Oryza sativa), 5'ss of exon 7
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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CCTGATTGAATATAGAGCACATCCTTTCTGGTTACAAAAATACTGTCCATCACATGAGGTGGACGGTACTCCAAGATGCTGTAGTTGTGAAAGAATGGAGgtacgttcaat-----taccatgtttgaatttataaat-ctgattcagcatacttg--gtcagat----------atgttgctgttgcaaaattttgatcagttcatcaaaaaatggcttgtgctcttatcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G099328_T04 (Zea mays), 5'ss of exon 8
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatct-tcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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CCTCATTGAATACCGAGCACATCCTTTCTGGATGCAGAAGTACTGTCCTTCCCATGAAGATGATGGCACTCCTCGGTGCTGCAGTTGTGAACGAATGGAGgtcagt----aaaagtt-----------ttctatatctgtcaatgagtcctgtttccctgttcaattcctgattggaagccgctcagttatggttattacggcaccacgacgagc-------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G017845_T02 (Zea mays), 5'ss of exon 6
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
|||||||| ||||| |||||||| |||||| | ||||| |||||||| ||||| || ||||| ||||| |||| ||||||||||||||||||||||| | | | || | || || | || || | | | | || || | | | | ||||| | ||| ||| | |||| | | |||
CCTTATTGAATATAGGGCACATCCTTTCTGGGTACAAAAATACTGTCCTTCACATGAAATGGATGGTACTCCGAGGTGCTGTAGTTGTGAAAGAATGGAGgtaggccagtt-agcatgtttttcttaatttggtct----tgtgggcatatt-tcatggttagaagagagcctctgtgtgtgaaatttggatcattt--cattccaacatggtttgttcacttaccag-----
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 4
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaaga--agatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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CCTCATTGAATACCGGGCCCATCCTTTTTGGATGCAGAAGTATTGTCCTTCCCATGAAAATGATGGTACACCTAGGTGCTGCAGTTGTGAACGAATGGAGgttagtgttatgtttacatacaataatatat---atatata-tatatatatatatatatatatatat-attattgatggattcataaaaaataaaatgtgg-atcc-----------------------------
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 3
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
|| |||||||||||||| ||||| |||||| | ||||| ||||| || ||||| |||| |||||| ||| |||| ||||||||||| ||||||||||||||||||| | || ||| | | || || ||| | | |||| || | | |||| || || | || || | ||| | ||||||
CCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGgttagttatat-------tgactcccaaatcttttcatcctattattatcaattagaagctaactgttggatccttcctctcctccccccattccctgtcccgttttcttgc----cttttcaatcaatgcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G38640.1 (Glycine max), 5'ss of exon 6
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
|| |||||||||||||| ||||| |||||| | ||||| ||||| || ||||| |||| |||||| |||||||| |||||||| || |||||||||||||| |||| | | | ||| | | || || | | | | |||| |||| | | | | | || || ||| | | | ||| | |||||
TCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGgtcagttatat-------tagctcccaaatcttttcatcctattattaacaattagaagctaactgatggatcccttcccctcctccctccattccctgtcccgttttcttgc---cttttcaatcagtgcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G19010.1 (Glycine max), 5'ss of exon 6
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacac-actgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
|| |||||||||||||||||||| |||||| | ||||| || ||||| || || |||| |||||| |||||||| |||||||| ||| ||||| ||||||| |||| | | |||| || | | | | | | | | || | || || | || || || | | | | | | ||| | || | | | |||
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagttatatcagatcacaaatttttttcataaattttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcatttcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G06720.2 (Glycine max), 5'ss of exon 7
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatccca--cacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
|| |||||||||||||||||||| |||||| | ||||| || ||||| || || |||| |||||| |||||||| |||||||| ||| ||||| ||||||| || | | | |||| || | | | | | | | || | || || | || || || | | | | | | ||| | || | | | |||
TCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGgtcagctatatcagatcacaaaattttttcgtaattttttgttaccaacaagcagatactgatgtatcccatctctcactcctttctttgtttttgtctttttcctttccgtatgaaactttccgatcagttcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 7
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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CCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGgtcagtt--------atatcagctagcaaaacattt-catcg-------tttgttgttacc-aacaatatctcactcctttct--ttgtttttgtttgtttccttttcatatgaaactttccaatcagtgcag
upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 7
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
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TCTTATTGAGTATAGGGCACATCCCTTTTGGATGCAAAAGTATTGTCCTTCACATGAGCGTGATGGAACTCCTCGGTGTTGCAGTTGTGAGCGAATGGAGgtcagttgttcga---tatagcatttctgttaata------ggaaaataaatttaagaatctgattcgaaa-accagatgt----tgttctgtttttggctcatggtttcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720145|gb|EE095821.1|EE095821EST: CACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAG GCAAGGGACACTAGGTATCTATCACTTGATGATGGTAGGAAACTATGTCTG
genomic: CACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttgga ... acccatgcagGCAAGGGACACTAGATATCTATCACTTGATGATGGTAGGAAACTATGTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTATTGAGTATAGAGCACATCCGTTCTGGATGCAAAAGTACTGTCCCTCACACGAGCATGATGGAACTCCTCGGTGTTGTAGTTGTGAAAGAATGGAGgttagttggaagaagatacaaccccccatcccacacacactgaagaaatcttcttgtagcttgatgataaacaacagatctctaatttttcttttttggtatttctttatggaaaatctgccaacccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA