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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTAAGACCTGTGACATATCTAAAAGGATCATATAGCTCTCCTCATGATGTGCCTTATGGATATCTCTGGAGTCCTCACCTTGTTCCTAAACCAAAAGgtcacttttacgtatttcatttatatatgatagcgttttttattaaattgctactccaaggtataatcgtcagccctgcacttatttctcatatcgatca...

Basic information

species Vitis vinifera
transcript Vv04s0023g00050.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g00050.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S110_116V6.1 (Physcomitrella patens), 5'ss of exon 10
AAGCTAAGACCTGTGACATATCTAAAAGGATCATATAGCTCTCCTCATGATGTGCCTTATGGATATCTCTGGAGTCCTCACCTTGTTCCTAAACCAAAAGgtc---act-tttacgtatttcatttatatatgatagcgttttttattaaattgctactccaaggtat-aatcgtcagccctgcacttatttctcatatcgatca----------------------------------------------------------------------------------
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AAGCTACGACCCATCACCTACTTGAGTGGTTCTCAGGGCTCCATCGCCGACTTGCCTACAGGATATATTTGGAGTCCTCATCTTGTTCCTAAACCGAAAGgttcgaactattcacctcctcacctgatacgttcaaatgtttttgac--aattgttacgccgatatgttgattgcaaattgtgcac--atcagataatccgattattcttgcgtctgattttattagtttgtgacaattgagtgctgaaattatcaggattcttacgaggacgtctcacttttacag