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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag

Basic information

species Vitis vinifera
transcript Vv04s0008g07320.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g05630.4 (Oryza sativa), 5'ss of exon 6
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgt--ttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag
||||| |   | || |||||||| ||||| || |||||||| || |||||||| ||||||||||| |  ||  ||||             ||   | |    |   |||  ||||||| | |    |||    | | | |     ||  | |     | | | | | ||       | ||||  |||
GAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttgagtctccttcacccgcttgtatgtt-gccattggcgccttatatatgttactcaata-----catgaaacccaaatt----ctattt-ccag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os02g05630.3 (Oryza sativa), 5'ss of exon 6
-------------------------GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgt--ttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag
                         ||||| |   | || |||||||| ||||| || |||||||| || |||||||| ||||||||||| |  ||  ||||             ||   | |    |   |||  ||||||| | |    |||    | | | |     ||  | |     | | | | | ||       | ||||  |||
GAAATGCATCTTGTTTTATTTACAGGAGGAGATTGTCGATAGCTCCCTTGAGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacagaaatttcttgagtctccttcacccgcttgtatgtt-gccattggcgccttatatatgttactcaata-----catgaaacccaaatt----ctattt-ccag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G829894_T03 (Zea mays), 5'ss of exon 2
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag
|||||   | | ||||||||||| || || || |||||||| ||||||||||| |||||||||||||| ||||||||   |       |  |||  | | |     || |   || |    ||   |  | ||  ||   ||  |    | | ||||                            
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGTGATGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatattgctaaatatattcattcagtgcaattg-gtctgtctgtcactcttacctgacgttatgtatttttccag--------------------------

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgt----ttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatat-tcacacacaacccttcacagtcttcctcatagcta-atacgtcaccat--ttatcag----
   |||    ||||   | | |||||||||||||||||||| |||||||| ||||||||||| ||| | || |||||    | |      ||   |     ||  |      ||||   |     || || |    |    |  |   | | |    |  |||  | || |  | | | || ||  ||  ||     
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtacca-cctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 7
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgt----ttgttttctcgtccctatttctttatgcccatttgtatggtagatggtgga-tattcacacacaacccttcacagtcttcctcatagcta-atacgtcaccat--ttatcag----
||||||    ||||   | | |||||||||||||||||||| |||||||| ||||||||||| ||| | || |||||    | |      ||   |     ||  |      ||||   |     || || | |  |    |  |   | | |    |  |||  | || |  | | | || ||  ||  ||     
GAGGAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtacca-cctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattca-cacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag
|||||   | | ||||||||||| || || || |||||||| || || ||||| |||||||||||||| ||||||||   |      ||  |||  | | |    || |  ||    | | |  ||  | |    ||| | |||      | | |   | | ||                      
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatct----ccttcggtgcaattggtc-tgtctgtctgtcactccacctgatgtaatgtattttacag----------------------

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 7
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattca-cacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-
|| ||||| |||||||||||||| ||||||||||| || |||||||| || || |||||||||||||||||||||||       ||  |    |||||||    | ||||  |    || |   || ||  ||| | || |  |  | | |||       | |   |  |    |  ||  | ||  
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgca----ctgatgttcatttctt----ctcattgatg-actaaa--atgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaag-ataaaccaaa

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-
|| |||||  ||||||||||||| ||||||||||| || |||||||| || || |||||||||||| | ||||||||||||  |   || |  |||||||    | ||||  |    || |    | || ||||  || ||||  | | |||       | |   |  |    |  || ||  |  
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgttc--atttctt----ctcattgatg-actaaa--acgcatcttcat-cataaccactaaaagtaggagcaaaatggagcaaaa-aggatataaaaac

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G33690.2 (Glycine max), 5'ss of exon 8
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcaca-cacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-
|| |||||| |||| ||||| || |||||||||||  | ||||||||||| || |||||||| ||| |||||||||||||   |    |    |||||||       | |  |       || ||| | |||  || || || ||   | | |       |||   |||  || |  |  |||||  
GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCCAGTGATGGGCTATGGGATGTCGTCTCAAATGAGgtttgccatg--attttcatttcttcccttttactgttgataactatagtgtacatttccatcataaaccacgaaaat-------ata---aatgagttaagacctatcaag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G12220.1 (Glycine max), 5'ss of exon 7
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-
|| |||||| |||| ||||| || |||||||||||  | || |||||||| || |||||||||||| ||||||||||| |   |   || | | | |     |  ||  |||     || |  ||  || | ||  || || ||   | | |       |||   ||   || |  |  |||||  
GAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTTATATTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGgttggcaatgatgttcatttcttcccgtttcctgttgataactacagtgtacatttccat-cataaaccacgaaaat-------ata---aacgagttaagacctatcaag

upper sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttcttta-tgcccatttgtatggtagatggtggatattcacacacaaccc-ttcacagtcttcctcatagctaatacgtcaccatttatcag
||||||||  |||| ||||| ||||||||||| || ||||| |||||||| || ||||| |||||  | || |||||  |   | || |    ||||||  | | |||  ||  |       |  |  | |||| ||  |  |    ||| |  ||      |    ||    ||   ||||  |||
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttg-atttctaaacttccctgttaaacttcctctttttaacattcccaatcctcggactcaaaaactgatctctgttcaa---atctttattt--cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351047336|gb|FQ451848.1|FQ451848
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351049231|gb|FQ449953.1|FQ449953
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAA
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAA
EST: gi|351042063|gb|FQ456273.1|FQ456273
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCCGACC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACC
EST: gi|351012818|gb|FQ430381.1|FQ430381
EST:     GTTTCTTATCCTTGCCAGTGATGGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAAC
genomic: GTTTCTTATCCTTGCCAGTGATGG-ACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAAC
EST: gi|351032248|gb|FQ460505.1|FQ460505
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCGATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|34548353|gb|CF516585.1|CF516585
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351043099|gb|FQ451272.1|FQ451272
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|46917628|gb|CN546957.1|CN546957
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|110357829|gb|EC921601.1|EC921601
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|32246155|gb|CD711974.1|CD711974
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|32245610|gb|CD711429.1|CD711429
EST:     AGTTTTTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351045561|gb|FQ440746.1|FQ440746
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|352794348|gb|FQ481579.1|FQ481579
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351040277|gb|FQ425363.1|FQ425363
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAAGCTGTCCCAATGATCAAACCAATCCCAGACCCA
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCA
EST: gi|351012750|gb|FQ430313.1|FQ430313
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCCAACCAATC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATC
EST: gi|351054667|gb|FQ456864.1|FQ456864
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCCGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351052837|gb|FQ456565.1|FQ456565
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|110413000|gb|EC978769.1|EC978769
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|349830755|gb|FQ417053.1|FQ417053
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAAGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351044326|gb|FQ452878.1|FQ452878
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351055478|gb|FQ442274.1|FQ442274
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|110372684|gb|EC936869.1|EC936869
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351056642|gb|FQ443269.1|FQ443269
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGGCAGCAA-
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGG-CAGCAAA
EST: gi|110414059|gb|EC979882.1|EC979882
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351048943|gb|FQ449786.1|FQ449786
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCCATCCCAGACCCAGAGGAGGCAGC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGC
EST: gi|351027668|gb|FQ446835.1|FQ446835
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351054200|gb|FQ450282.1|FQ450282
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351047281|gb|FQ454892.1|FQ454892
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|352790076|gb|FQ479686.1|FQ479686
EST:     AGTTTCTTATCCTTGCCAGTGGTGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351032995|gb|FQ461884.1|FQ461884
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAAAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351053821|gb|FQ441587.1|FQ441587
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351041917|gb|FQ456127.1|FQ456127
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAA                         GAGGCTGGTC-CAATGATCAAACCAATCC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTG-TCGCAATGATCAAACCAATCC
EST: gi|351022909|gb|FQ428818.1|FQ428818
EST:     AGTTCCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|27586639|gb|CB009334.1|CB009334
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|110427933|gb|EC994389.1|EC994389
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351044454|gb|FQ442985.1|FQ442985
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|352786293|gb|FQ478904.1|FQ478904
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAAGCAGC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGC
EST: gi|351048606|gb|FQ448880.1|FQ448880
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|349830841|gb|FQ418149.1|FQ418149
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|352786304|gb|FQ478915.1|FQ478915
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351052370|gb|FQ455542.1|FQ455542
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAG
EST: gi|351038034|gb|FQ460776.1|FQ460776
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351041635|gb|FQ455845.1|FQ455845
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCTGACCCAGAGG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGG
EST: gi|351012059|gb|FQ429865.1|FQ429865
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351038077|gb|FQ460819.1|FQ460819
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCCGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|352798552|gb|FQ480577.1|FQ480577
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCCAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|351043128|gb|FQ451301.1|FQ451301
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAAGAGGC
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGC
EST: gi|46917517|gb|CN546846.1|CN546846
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
EST: gi|110696310|gb|EE075070.1|EE075070
EST:     AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAG                         GAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttc ... catttatcagGAGGCTGTCGCAATGATCAAACCAATCCCAGACCCAGAGGAGGCAGCAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag

- - - - - - - - - - - - - - - - - - - - - -  GATGGA