1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatctctcaaatcttagttcagcttatgcaagattgcataactaaatttcatataagatcttacttttaatgttgcatcacccttgtatagcac...
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATAGCGCTTATATTGGATGCATGAAGTCGGGAGATGTGATAACAGAAGT GGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATCEST: gi|110424757|gb|EC991128.1|EC991128
genomic: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatc ... aatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
EST: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGC GGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
genomic: GATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatc ... aatttttcagGGGAAGGCCGTGGTATGAACCTGAATGGTGGAAATTCGGGGATGAGAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTTTAATTAGTCTTCTTGAAAGCCGCCGTGGTCAAGATAGCGCTTATATTGGATGCATGAAGTCAGGAGATGTGATAACAGAAGCgtaatttatctctcaaatcttagttcagcttatgcaagattgcataactaaatttcatataagatcttacttttaatgttgcatcacccttgtatagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa