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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGTCTTTCTGGAACTGGTTCTCTTCGACTTGCTGCGGCCCTTATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattccccttgtttgggagatttgtgtcaagagtactgatttctcatggttgaagaatcatctttgcag

Basic information

species Vitis vinifera
transcript Vv04s0008g06040.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G13480.2 (Glycine max), 5'ss of exon 6
GTTCAAGGTCTTTCTGGAACTGGTTCTCTTCGACTTGCTGCGGCCCTTATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagta---------ttccc-------cttgtttgggagatttgtgtcaagagtactgatttctcatggttgaagaatcatctttgcag
|| |||||||||||||||||||||||||| ||||| | ||| || || ||||||||||||||||||||||||||||||||||||||| | || || ||||||  |||         ||| |       |||| | | || | |||| |   |||| |  |  ||    |||   |  ||  |||| ||||
GTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCAGCTCTGATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCAGCTCCTACCTGGGgtatgtatctgactgcttctctgcttaacttggtcgtgatacttgt-ttgggagttcaaacatcctg-ggtaacattattgtctt-gcag

upper sequence: Vv04s0008g06040.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G33050.4 (Glycine max), 5'ss of exon 6
GTTCAAGGTCTTTCTGGAACTGGTTCTCTTCGACTTGCTGCGGCCCTTATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtatt-------ccccttgtttgg-------gagatttgtgtcaagagtactgatttctcatggttgaagaatcatctttgcag
|| |||||||||||||||||||||||||| ||||| | ||| || || ||||| ||||||||||||||||||||||||||||||||| | || || ||||||  | |||         || || ||         | ||| | ||| | |       |     | ||||   |  ||  |||| | ||
GTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGACTAGGTGCAGCTCTGATAGAGCGATATTTTCCTGGGGCAAAAGTTTTGATATCAGCTCCTACCTGGGgtatgcattttactgcttccctgattaacttggtcgtgatatttgttagggagttcaaacatccctggtaacattattgtctt-gtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965358|gb|GW837073.1|GW837073
EST:     AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|32270026|gb|CD719185.1|CD719185
EST:     GTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: GTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|32272538|gb|CD721697.1|CD721697
EST:     GTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: GTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|30326281|gb|CD009543.1|CD009543
EST:     GTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: GTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|161712612|gb|FC062214.1|FC062214
EST:     AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGG                         GTAAATCACA-GAATATTTTTCA-TGATGCTAGAGTTCCCTGGTCTG
genomic: AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAA-TCACAAGAATATTTT-CAATGATGCTAGAGTTCCCTGGTCTG
EST: gi|30326632|gb|CD009894.1|CD009894
EST:     GTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: GTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|29785081|gb|CB341792.2|CB341792
EST:     AGAACGATATTTTCCTGGGGCAAGAGTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|161707802|gb|FC056449.1|FC056449
EST:     AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|32271796|gb|CD720955.1|CD720955
EST:     GTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: GTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
EST: gi|352787010|gb|FQ476043.1|FQ476043
EST:     AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGG                         GTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC
genomic: AGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGgtgagtattc ... atctttgcagGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACC