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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTCTCCTGTATACTGGCATTCTTCTTGAATTACAGCATATTCCTGAATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAGgtttgtttatcagtctttttgtacccttcttaatgaatgactgatttctttcatggatttctttctattctaccttcttttgttagttttgtttgcttaa...

Basic information

species Vitis vinifera
transcript Vv04s0008g05570.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G14360.1 (Glycine max), 5'ss of exon 8
GCTGCTCTCCTGTATACTGGCATTCTTCTTGAATTACAGCATATTCCTGAATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAGgtttgtttatcagtctttttgtacccttcttaatgaatgactgatt-tctttcatggatttctttctattctacctt----cttttgttagttttgtttgcttaa
|||  | ||||| || ||||||||||||||||||||| | || || ||||| ||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||| |  |   ||| ||||       |  ||||||     |   |  || |  ||||       ||  |||| |    |   || | |  | || ||     
GCTTTTTTCCTGCATGCTGGCATTCTTCTTGAATTACTGTATTTTTCTGAACACAACACTAAATTCAGCTGTGACACAGACAATTTGTGGTAATCTGAAGgtatgtatgccttgcttattgttttaccttgcatgaatagtgcaccatgatttacagattgtcagtgatgataccataaggcggatgatggcatagtatg-----

upper sequence: Vv04s0008g05570.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G32030.1 (Glycine max), 5'ss of exon 8
GCTGCTCTCCTGTATACTGGCATTCTTCTTGAATTACAGCATATTCCTGAATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAGgtttgtttatcagtctttttgtacccttcttaatgaatgac-tgatttctttcatggatttctttctattctaccttcttttgttagttttgtttgcttaa
|||  | |||||  | ||||||||||||||||||||| | || || ||||| ||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||| |  |   ||| ||||       |  ||||||            || |  | ||       ||  | || |      ||   |  || |  | | 
GCTTTTTTCCTGCGTGCTGGCATTCTTCTTGAATTACTGTATTTTTCTGAACACAACACTAAATTCAGCTGTGACACAGACAATTTGTGGTAATCTGAAGgtatgtatgccttgcttgttgttttaccttgcatgaatagtgccccaagatttacaggttgtcagtgatgatgccataaggctttgactaagtgtaatca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45368123|gb|CK906482.1|CK906482
EST:     ATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAG                         GATTTGTTTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTT
genomic: ATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAGgtttgtttat ... ctccttgtagGATTTGTTTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTT
EST: gi|352768138|gb|FQ467277.1|FQ467277
EST:     ATACAACTTTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAG                         GATTTGTTTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTT
genomic: ATACAACTCTAAATTCAGCGGTCACACAGACAATTTGCGGCAATCTAAAGgtttgtttat ... ctccttgtagGATTTGTTTACCATTGGACTTGGCTGGATGATTTTTGGGGGGCTTCCTTTT