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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGACATGAAGTTTTGAAGAGGATAGAAAGTGTTGGTGATGAGGAAGGGATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagatacacagatctgcttactggagagtggtgtttactgtattgacatggaataatgtacaagattttgcaattggaggccttgtctggttccttag...

Basic information

species Vitis vinifera
transcript Vv04s0008g05090.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687168|gb|EE064342.1|EE064342
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AAGAAA-GGAAATCAATCAAATCCCAAATTGGAAAAGATGCTTCCTCTGAT
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagA-GAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGAT
EST: gi|34544006|gb|CF512238.1|CF512238
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
EST: gi|352777331|gb|FQ473965.1|FQ473965
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
EST: gi|34543917|gb|CF512149.1|CF512149
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
EST: gi|34550009|gb|CF518241.1|CF518241
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCC
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCC
EST: gi|34550884|gb|CF519098.1|CF519098
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCC
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCC
EST: gi|110723917|gb|EE099287.1|EE099287
EST:     GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGG                         AGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG
genomic: GATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagataca ... tcttgtctagAGAAAAGGAAATCAATCAAATCCAAAATTGGAAAAGATGCTTCTTCTGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGACATGAAGTTTTGAAGAGGATAGAAAGTGTTGGTGATGAGGAAGGGATACCGACTGCAACAGTGAAAATCATTTACTGTGGTGAAATTCCCGAGGgtaagatacacagatctgcttactggagagtggtgtttactgtattgacatggaataatgtacaagattttgcaattggaggccttgtctggttccttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa