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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtcctttattgcttaaattcttatacttgtttattgtttacttgagcattagtcagagctatatttttctctatggtattgctttatgt...

Basic information

species Vitis vinifera
transcript Vv04s0008g04910.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtcctttattgcttaaattcttatacttgtttattgtttacttgagcattagtcagagctatatttttctctatggtattgctttatgt-----
||||||||||||||||||| | || ||||||| ||| ||||| ||||| |||||||| || ||||||||||| ||  || ||||| | |||||||||||||||||||      | ||  ||  ||   ||| |    |||  |||  ||    | |  | |  |  ||  |  ||||   |||    |     |||||||     
AGGGGAGTGCGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctacatcctttccttattttgtttcct---tttgagtatgtttggaatcacaaattttgggaattg-atttgattctg-aatggaaatttatgtttgaa

upper sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtc-atttgtcctttattgcttaaattcttatacttgtttattgtttacttgagcattagtcagagctatatttttctctatggtattgctttatgt---
||||||||| ||||| ||| | || ||||||| ||| ||||| ||||| |||||||| || ||||||||||| ||  || ||||| | ||||||||||||||||||| |  | ||||||  |  ||   ||| |    |||  |||  ||    | |  | |  |  ||  | |||||   ||    ||     | |||||   
AGGGGAGTGTGTTCACGAGCTTAGCTGTAATGGCAACAAGTTTCACTCATGTGTTTTCCATCCAACATATTCTTCGCTGTTGGTCGTTGGTTGTTACCAGgcaagtctacgtatcctttccttatttgtttcct---tttgagtatatttggaatcacaaattttgggaatt-tatttgattcatgagtggaattctatgtttg

upper sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtcctttattgcttaaattctt-atacttgtttattgtttacttgagcattagtcagagctat-atttttctctatggtattgctttatgt
 ||||| || ||||||||  | || ||||| |  || ||||| ||    | |||||| |||||||| ||  | |||||||||||||| || |||||||||||||||| |   | |||| ||  |||  || || ||   | ||  || |||| ||     || || |   |  |  |||  | |     |||    |||   
TGGGGAATGTGTTCATGAACTTAGCTGTAACGGAAATAAGTTTCATAAATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGgcaagtc-tacattcttttttatttacttttttcatttcttttcgttttttatttttattttggtgaattcggttgtttgcccccgaaatatgaaattaat-

upper sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 17
AGGGGAGTGCGTTCATGAGTTGAGTTGTAATGACAAGAAGTTCCACTCCTGTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatttgtcctttattgcttaaattcttatacttgtttattgtttacttgagcattagtcagagctatatttttctctatggtattgctttatgt---
|||||| || ||||||||  | || ||||||| ||| ||||| ||  | | |||||| |||||||| ||  | |||||||||||||| || |||||||||||||||| |   | |||| ||  | |  || | ||   | ||  || |||  | | | ||| |   |   |           ||||  |||  || |      
AGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAATAAGTTTCATGCATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGgcaagtc-tgcattcttttttattcagtttttcatttcttttcgtttttttttggtgaatttggttg--tttgtccccaaaatatgaaattaattgacaaaga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881075|gb|DT030130.1|DT030130
EST:     GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|110690242|gb|EE067180.1|EE067180
EST:     GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|34545176|gb|CF513408.1|CF513408
EST:     GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
EST: gi|34546171|gb|CF514403.1|CF514403
EST:     TGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGGTNGT-ACCAG                         TCTCTAGAGCTTTGGAACATG
genomic: TGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTT-GTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATG
EST: gi|110699780|gb|EE077080.1|EE077080
EST:     GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAG                         TCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT
genomic: GTGTTTTTCACCCAACATATTCGTCATTGCTGGTCATCGGTTGTTACCAGgcaagtcatt ... tttgctacagTCTCTAGAGCTTTGGAACATGAGCGAGAACAAGACAATGACTCTTTCAGCT