Sequence
atgc intronic sequence ATGC exonic sequenceGCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaactagttatcgtgttggcaaaatacagatctgttgcttatgttatttccgtttgtgtattctgtcctcgtttcaaccacacaaattctggtggttga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 7
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaa-ctagttatcgtgttggcaaaatacagatc---tgttgcttatgttatttccgtttgtgtattctgtcctcgtttcaac-cacacaaattctggtggttga
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GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGgtaaattggttatcttttaaggtttgcttttattttatcttgcttgagtttggaatatccttgtgatgaaggttaatgtggcctcgagtatgctccaatg-----
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G366935_T09 (Zea mays), 5'ss of exon 7
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaact-agttat-cgtgttggcaaaatacagatctgttgcttatgttatttccgtttgtgtattct--gtcctcgtttcaaccacacaaattctggtggttga
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GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGACCATAACTCGATTGTTTCTACGAGGCATTACAGGGCACCTGAAATAATCTTAGgtaatttggttattcttgaaggtttgatttagttttcttgtgtgagatatgaac-tatgatcattcagagtgaagatttctgtgttcttaaatatgctcga---
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G08480.1 (Glycine max), 5'ss of exon 8
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaactagttatcgtgttggcaaa-atacagatctgttgcttatgttatttccgtttgtgtattctgtcctcgtttcaaccacacaaattctggtggttga-
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GCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagtatggttttggctgccaagaatgtttacttgtttttctattgccctgtgta-agtgtgtaa-catagaaaatatatggtgcttgggaacgaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378511|gb|EC943648.1|EC943648EST: TAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAG GTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAG
genomic: TAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaactagtt ... tttattgcagGTTTGGGATGGAGTTATCCATGTGATTTATGGAGTGTTGGTTGCATACTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAACCATAGCTCCATTGTTTCCACAAGGCATTACCGAGCACCCGAGGTTATTCTAGgtaactagttatcgtgttggcaaaatacagatctgttgcttatgttatttccgtttgtgtattctgtcctcgtttcaaccacacaaattctggtggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa