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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacactttccttccattattagaatctggttccacttgtgttatccatataactcagcattgtgtggtgtcttttag

Basic information

species Vitis vinifera
transcript Vv04s0008g00770.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G09640.1 (Glycine max), 5'ss of exon 5
GGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactaca----ctttccttccattattagaatctgg--ttccacttgtgttatccatataactca---gcattgtgtggtg----tcttttag------
|| ||||| |||||||||||||| || |||||  |||| ||||| ||| ||||||| || |||||||| ||   |||||| || |||||| | ||    |  |  || ||| ||| ||    ||  |   |  |    |||  ||  |||  |    || | |||  ||    ||||||||      
GGAGGTCCTCATAACCACACAATTGGAGGACTAGCAGTTTGCTTGAAGTATGCCCAGTCTCCAGAATTTAAAAATTACCAAAATCAGgtattccagtagcccttttttcatcattggaggtagggatagtaaatagtatatgaatgcaaccaatgcacagtttgtattgacattcttttagaaacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877324|gb|DT026379.1|DT026379
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110361720|gb|EC925214.1|EC925214
EST:     TCTGCTTAAAGCATGCCCAATCCCTAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110390273|gb|EC955175.1|EC955175
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110384184|gb|EC948603.1|EC948603
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
EST: gi|110385950|gb|EC950512.1|EC950512
EST:     TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAG                         GTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT
genomic: TCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGgtactacact ... tgtcttttagGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATAT