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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCAACAGGACAAGTTGCTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagtcccatttatcttagcatgaaaaagttactctactccattttttaatcatgcgttgcttttgaatttgatcccaatggatgcttagagaatttgttatctagttttatttgttggctattttctttcctgtag

Basic information

species Vitis vinifera
transcript Vv03s0097g00590.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G34360.3 (Glycine max), 5'ss of exon 8
GTTGCAACAGGACAAGTTGCTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagtcccatttatcttagcatgaaaaagttactctactccattttttaatcatgcgttgcttttgaatttgatcccaatggatgcttagagaatttgttatctagttttatttgttggctattttctttcctgtag
||||| ||||| ||||||||||||||||| ||||||  ||| |||||||||||||| ||||| |||||||| ||         || ||  |  ||| | | |  || | |  |    |||| |||    |     ||||   | | || | ||  | | |||  ||                                             
GTTGCTACAGGGCAAGTTGCTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgag---------ttgataatgacattatagatata-tatgttg---ttttcaattgaac----tttttatttcttatacaaaatgttcctttcag---------------------------------------------

upper sequence: Vv03s0097g00590.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G05280.1 (Glycine max), 5'ss of exon 8
GTTGCAACAGGACAAGTTGCTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagtcccatttatcttagcatgaaaaagttactctactccattttttaatcatgcgttgcttttgaatttgatcccaatggatgcttagagaatttgttatctagttttatttgttggctattttctttcctgtag
||||| || || ||||||||||||||||| ||||||  ||| |||||||||||||| ||||| |||||||| ||         || ||  |  |||   | | ||  | |  |    |||| |||    |     ||||   | | || | ||  | | |||  ||                                             
GTTGCTACCGGGCAAGTTGCTAGCACTGGAATGGTTCTTCTAAGCTATGTTCAGAAGGTATCTGAGAAGgtgag---------ttgataatgacatagtagattt--tatgttg---ttttcaattgaac----tttttatttcttatacaaaatgttcctttcag---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370748|gb|EC932839.1|EC932839
EST:     CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAG                         GTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
EST: gi|110428685|gb|EC995164.1|EC995164
EST:     CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAG                         GTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
EST: gi|110376048|gb|EC941087.1|EC941087
EST:     CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAG                         GTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
EST: gi|110698670|gb|EE076432.1|EE076432
EST:     CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAG                         GTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
EST: gi|352765105|gb|FQ465802.1|FQ465802
EST:     CTAGCACTGGCATGGTTGCTTTGAGCTATGTTCAGAAAGTATCAGAGAAG                         GTTTCTTTAGCATCGGATTTCATGTACATTTATATGTCAAGAGATGTCACT
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACAATTATATGTCAAGAGATGTCACT
EST: gi|351046106|gb|FQ442484.1|FQ442484
EST:     CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAA                         GTTTCTTTAGCATCAGATTTCATGTACA
genomic: CTAGCACTGGCATGGTTGCTCTGAGCTATGTTCAGAAAGTATCAGAGAAGgtaagaaagt ... tttcctgtagGTTTCTTTAGCATCAGATTTCATGTACA