1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATGTCGAACGCCCAAAATATTTGCAAGCACAAGAAGCCATTGACTATGGCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactcttattaaatttttctctcccgttttgttaacatcacttgctttccatgtctattctaacagtattttgttactgatcag
species | Vitis vinifera |
transcript | Vv03s0091g00700.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|32457905|gb|CD799079.1|CD799079
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|27579693|gb|CB002388.1|CB002388
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|30321875|gb|CD005137.1|CD005137
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|110391380|gb|EC956351.1|EC956351
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|26264295|gb|CA815358.1|CA815358
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|30321951|gb|CD005213.1|CD005213
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|110361742|gb|EC925238.1|EC925238
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|32245203|gb|CD711022.1|CD711022
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|45770688|gb|CN006540.1|CN006540
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|352764297|gb|FQ471277.1|FQ471277
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|110388571|gb|EC953335.1|EC953335
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGAEST: gi|110395310|gb|EC960968.1|EC960968
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
EST: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGG AATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
genomic: GCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactct ... tactgatcagAATTATGATGAGATGCTTGCCCAAGCAAAATCCATGAGGAGAGCAGCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGTCGAACGCCCAAAATATTTGCAAGCACAAGAAGCCATTGACTATGGCCTTGCAGACAAGATAATTAGCTCAATGGATCCAGCATATGAGAAACGGgtaaaactcttattaaatttttctctcccgttttgttaacatcacttgctttccatgtctattctaacagtattttgttactgatcag
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