Sequence
atgc intronic sequence ATGC exonic sequenceGACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttatttcttttttcacataaactatagcaaattgtttgctattatttttggtcaaatattatgttgagggtgacacttgtttgtggttgtttcatcttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G12610.2 (Glycine max), 5'ss of exon 8
GACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttatttcttttt--tcacataaactatagc-aaattgtttgctattatttttggtcaaatattatgttgagggtgacacttgtttgtggttgtttcatcttg---
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AACTAGCCGAGAATTAACACCGGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCGTCCAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgttaaccttttttaattacttaaattgcagtgaaaatactttttcatgctcttg-taaaatttgaca-----gaggatatatgacagcctccattctgaagtgagc
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G01520.1 (Glycine max), 5'ss of exon 8
GACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttattt---cttttttcacataaactatagcaaattgtttgctattatttttggtcaaatattatgttgagggtgacacttgtttgtggttgtttcatcttg---
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AACAAGCCGAGAATTAACTCCAGCAATTACTGTTCTTCAGCTTTTCTTAAGTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGgtaggccaggctttaattacacaaatttcactaaagtaatttttatgctgtt--gtagaatttgaaataaagaat---atttgat-atgcctctcaagtctcaaac
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 5'ss of exon 7
GACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgtt----at-----------ttcttttttcacataaactatagcaaattgtttgctattatttttggtcaaat-attatgttgagggtgacacttgtttgtggttgtttcatcttg-------------------------
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GACAAGCCGAGAACTGACTCCAGCAATCACTGTTCTTCAGCTCTTTTTGAGTTCCCCCAGACCAGTGTTGAGATTTGCCGCTGTCCGGACTCTGAACAAGgtttgcaatgctttcaactgttctctttgtacattgacaccgaaatgatgttt--tactattctgggtagattcatcattacctttatcatgaggatgaggagatatttcactgtatactaaacacaagtttgaaccacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359101|gb|EC920028.1|EC920028EST: GTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAG GTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAA
genomic: GTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttatttctt ... ttctttgcagGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGgttatttcttttttcacataaactatagcaaattgtttgctattatttttggtcaaatattatgttgagggtgacacttgtttgtggttgtttcatcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagcaaa