1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTAATCTCATTGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGgttaggattttttattttttatttttaatgcaaattcttagcagtatatattcttgattccacttgcagcacatttcagcagcttttggtatttggtgcattttgcag
species | Vitis vinifera |
transcript | Vv03s0063g01110.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAG GTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTCEST: gi|110729272|gb|EE105384.1|EE105384
genomic: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGgttaggattt ... cattttgcagGTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTC
EST: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAG GTCNTGGTGCCCAAG-AGGCAAATCTGTACACTGAAATAGCTGAAGGCATTEST: gi|27583381|gb|CB006076.1|CB006076
genomic: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGgttaggattt ... cattttgcagGTCGTGGTGCC-AAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATT
EST: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAG GTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTC
genomic: TGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGgttaggattt ... cattttgcagGTCGTGGTGCCAAGGAGGCAAATCTGTACACTGAAATAGCTGAAGGCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAATCTCATTGAAACAAGAAATCTCATTATTGATGCAAAATCTGGTGTGAGTGGAGCAGgttaggattttttattttttatttttaatgcaaattcttagcagtatatattcttgattccacttgcagcacatttcagcagcttttggtatttggtgcattttgcag
- - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG