Sequence
atgc intronic sequence ATGC exonic sequenceAGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g41460.1 (Oryza sativa), 5'ss of exon 6
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc
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AGAATATTGGGTGTGCAGTACTCTATTCCAGATTATGTCCACATATCTCCAGAGTGCCGAGATCTTATTGCGAGGATTTTTGTGGCCAACCCAGCCACTgtgagtacctctgcct-ttatactgtactagttactagcctct---tttctgtatcat-ttccttcttgatataaatcgcaattgtttggacatacag--
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G01240.1 (Glycine max), 5'ss of exon 8
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattt-tttaatta--cagatcttcgtttgcaa-gttcatgggtattggtaacatgtttagtgctttcattat----tgatattcatctgagcacccttgc
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AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTCCCGAGTGCCGTCATCTAATCTCAAGGATCTTTGTGGCAGACCCTGCACAGgtcagctttttcctttaattaatctgaaaattatgtgctttatttataca-attgaggccaaaaggagttctagcaacacactctaacactt-tctaagttc------
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G15330.1 (Glycine max), 5'ss of exon 8
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcat-ctgagcacccttgc-
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AGGATTTTGAATGTTCAGTACTCAATTCCTGACTATGTTCATATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAGgtcagtttttttttaaaatatatatatttgctgaaacttagataccttttattatactatttggagagttga--agtgaaatggatgctaaatgagtttaaa
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G29500.1 (Glycine max), 5'ss of exon 8
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc----
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AGGATTTTGAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCTTCTGAGTGCCGTCATCTAATCTCTAGGATCTTTGTGGCAGACCCTGCACAGgtcagtttttttttttaatctgaaaatt-atgtgcgatatt-tatataatctgaaaattgttagcaaca-cact-ctaatactctttctaacacactattacta
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G33120.1 (Glycine max), 5'ss of exon 8
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc--
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AGGATTTTGAATGTTCAGTACTCAATTCCTGACTACGTTCACATATCTTCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTCGCTGATCCTGCAAGGgttagtttttatttcatataattattttttgatg-aaacttatataccttt-caaagtatttattataaaagttaaaaaatttaccatacacaacagtttgg
upper sequence: Vv03s0063g01080.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G33950.2 (Arabidopsis thaliana), 5'ss of exon 8
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtat---tggtaacatgttt------agtgcttt-cattattgatattcatctgagcacccttgc--
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AGAATCCTGAATGTTCAGTATGCTATTCCGGATTATGTTCACATATCTCCTGAATGTCGCCATTTGATCTCCAGAATATTTGTTGCTGACCCTGCAAAGgtaaaggaaggatcatgaaagctgcatttgttgatttatttgtgaattttctttatagtatgactgaaaagagaactttgcattttggccctcttggttggtttcttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71872877|gb|DT021932.1|DT021932EST: CTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACG AGGATAACGATTGCTGAGATCAGGAACCATGACTGGTTTCTAAAGAACCTC
genomic: CTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacat ... atctcaacagAGGATAACGATTGCTGAGATCAGGAACCATGAGTGGTTTCTAAAGAACCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAATTTTGAAAGTCCAGTATTCTATTCCAGATTATGTTCATATATCTCCTGAGTGCCGTCATCTGATCTCAAGGATTTTTGTAGCTGATCCTGCAACGgttagtacattttttaattacagatcttcgtttgcaagttcatgggtattggtaacatgtttagtgctttcattattgatattcatctgagcacccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT