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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctttagctcaatatgttttgcatgtgactctaatgttgaatacttgtcattgcttagtacttttcaatcttaggtggtgtttgtttttttact...

Basic information

species Vitis vinifera
transcript Vv03s0063g00290.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 5'ss of exon 7
CTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttag------ccctttagctcaatatgttttgcatgtgactctaatgttgaatacttgtcattgcttagtacttttcaatcttaggtggtgtttgtttttttact
 |||||||||||||| |||| ||||||||| |||||||| ||||| |||||  ||||  | ||||||| ||| || ||||| || ||||||||    ||||| |        | ||| | | | |  | ||  ||| | ||| | |  ||| | | || || | |   || | ||    ||  ||  |  ||    |   ||    
TTTTGGTGCTGGAAACTATGGAATGTGTGGACGTGCATACAGTCCAAATTTTTTGTTTATGTGGCCAACTGCTAGGATATCTGTCATGGGTGGCATCCAGgtaaaaacttatctttttgttgattcagcttgtcatataacttttac-ttgtacaatt-tcctagtcaagaatttcatgattgtaattattggcattccatt----

upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 7
CTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgtt-----agccctttagctcaatatgttttgcatgtgactctaatgttgaatacttgtcattgcttagtacttttcaatcttaggtggtgtttgtttttttact
||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||||||||||||     |  |   || ||||  ||  ||| || |  | | |     | | ||  |  ||   | | |  ||| |   |  |   || | | |  | | | |  
CTTCGGTGCAGGAAACTATGCAATGTGTGGTCGTGCCTATAGTCCCAACTTCTTGTTCCTTTGGCCAAATGCTAGAATATCTGTAATGGGTGGTGCTCAGgttgtataattctcataactcatgattatttacaagaaagtattggcattagtagat-ccagaacatcgctcttcttggttat---tgttctgtactgtgtgag-

upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 7
CTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctttagctcaatatgttttgcatgtgactct-------aatgttgaatacttgtcattgcttagtacttttca--atcttaggtggtgtttgtttttttact
||||||||| ||||| ||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| || |||||||||||||||||||| |    |  | ||||  |    |    | ||| |||       || | | |||  ||| ||||| ||  | |    ||     ||   ||||  |||||        
CTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGgtaa--tatacatctcatcactcatgagttatgattctttacaagaaagataaatttttggcattgattgttccagaacattgctttgcatggttattgttc-------

upper sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 8
CTTTGGTGCTGGAAATTATGCAATGTGTGGGCGTGCATATAGTCCCAATTTCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctttagc-tcaatatgttttgcatgtgactctaatg--ttgaa---tacttgtcatt---gcttagtacttttcaatc---ttaggtggtgtttgttttt-ttact---------------------
||||||||||||||| ||||||||||||||||||||||| |||||  |||| |||||| |||||||||| ||||||||   | | ||||| || |||||||| | ||     ||  | | ||||||     |  ||   | ||  |  ||   |  || | ||    |  ||| |      |||    || |||  ||||||   || ||| |                     
CTTTGGTGCTGGAAACTATGCAATGTGTGGGCGTGCATACAGTCCAGATTTTATGTTCATTTGGCCAAACGCCAGAATTGGCATCATGGGAGGCGCTCAGgtaaaccagaatgcaccgaaatgtttaaaccgaaaccaaactgaatcaaaatgtgtttataatcttagtgtagcagaacaaaattcagtttggttttgtttgacgttgttattggcttggcgaaaactttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881619|gb|DT030674.1|DT030674
EST:     TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG                         GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: gi|71884548|gb|DT033603.1|DT033603
EST:     TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG                         GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: gi|71881529|gb|DT030584.1|DT030584
EST:     TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG                         GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
EST: gi|71886428|gb|DT035483.1|DT035483
EST:     TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG                         GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCA
EST: gi|71888307|gb|DT037362.1|DT037362
EST:     TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGGTCAG                         GCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA
genomic: TCATGTTCCTTTGGCCAAATGCCAGAATATCCGTGATGGGTGGTGCTCAGgttagccctt ... tatcattcagGCTGCTGGTGTGCTTTCTCAAATAGAAAGAGGCAACAAGAAAAAGCAAGGA