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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacagttgattcatctgtcatggagatagtttatttgttctacttttatccgctaagtgtttggtgattacttgtcacaactgcatctacctgtctctaaacttctggaaaattttgggatcattgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g04470.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351047103|gb|FQ454713.1|FQ454713
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351015523|gb|FQ447352.1|FQ447352
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351026236|gb|FQ428248.1|FQ428248
EST:     GTACTTGGAAACAAATACCGGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|349822502|gb|FQ412766.1|FQ412766
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351014493|gb|FQ437495.1|FQ437495
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|30128724|gb|CB914063.1|CB914063
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351056783|gb|FQ443410.1|FQ443410
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351026103|gb|FQ428115.1|FQ428115
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|30296909|gb|CB973703.1|CB973703
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351027625|gb|FQ446789.1|FQ446789
EST:     GTACTTGGAAACAAATACCGGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|349826667|gb|FQ418758.1|FQ418758
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351055947|gb|FQ453408.1|FQ453408
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351044521|gb|FQ443052.1|FQ443052
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|294964977|gb|GW838780.1|GW838780
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCA
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCA
EST: gi|349828849|gb|FQ419182.1|FQ419182
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGCGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351039650|gb|FQ461517.1|FQ461517
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|161709016|gb|FC058796.1|FC058796
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351056747|gb|FQ443374.1|FQ443374
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351040873|gb|FQ438417.1|FQ438417
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAATTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|87584671|gb|DY473747.1|DY473747
EST:     ACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: ACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|349819344|gb|FQ412238.1|FQ412238
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|349817039|gb|FQ399786.1|FQ399786
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|30296834|gb|CB973628.1|CB973628
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|32270608|gb|CD719767.1|CD719767
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351034834|gb|FQ458191.1|FQ458191
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGCGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351024179|gb|FQ423602.1|FQ423602
EST:     GTACTTGGAAACAAATACCGGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|30299808|gb|CB976602.1|CB976602
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351021812|gb|FQ437197.1|FQ437197
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351054162|gb|FQ450244.1|FQ450244
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
EST: gi|351038002|gb|FQ460744.1|FQ460744
EST:     GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAG                         TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG
genomic: GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacag ... atcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACTTGGAAACAAATACCAGAACAAGTTGCTGGAGATAATTGATGCCAGgtaattacagttgattcatctgtcatggagatagtttatttgttctacttttatccgctaagtgtttggtgattacttgtcacaactgcatctacctgtctctaaacttctggaaaattttgggatcattgcag

- - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - GGAGAT