Sequence
atgc intronic sequence ATGC exonic sequenceCAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtatgttaatgcttttcatcactaattttcattatcatctatgatttgaaaatttgcttactctatgtagaacctcacataattgtatattctaactggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os06g41780.1 (Oryza sativa), 5'ss of exon 2
CAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtatgttaatgcttttcatcactaattttcattatcatctatgatttgaaaatttgcttactctatgtagaacctcacataattgtatattctaactggg
|| || ||||| | || | || || ||||| | ||||||||||| || || ||||| || || | |||||||||||||| ||||||||||||||||| || || || || || | | || | ||||| ||| | | |||| | | || ||| | | || |
TAATGCTCCAGAAGTACGAGAGCTGATTGTCCGGTGTGTCTCACAGATGGTTCTAAGTCGTGTCAACAACATAAAATCTGGCTGGAAGGGTGTTTTTATGgtatgta------ttgcagcaacgtttctctcatgaaaagaagact--aaaatatgcattat-tatggtgtttattgaattatttt-tgcactgtgcag-
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G48200.1 (Glycine max), 5'ss of exon 8
CAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgta-tgttaatgcttttcatcactaattttcattatcatctatgatttgaaaatttgcttactctatgtagaacctc-acataattgtatatt--ctaactggg
|||| | |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| | | || | | | | | | | || || | | | | || | || | | || || || || ||
CAACACCACAGAAATTAGAGAATTAATAGTTCGTTGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtaatgttgaag-ttggcttgatattctcctccccccccccaagacatggtt-tcagaccatttgataaaaaaaattgaaattgccaaatgttgctcaattg--
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G00230.1 (Glycine max), 5'ss of exon 9
CAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgta-tgttaatgctt--ttcat-cactaattttc--attatcatctatgatttgaaaatttgctt-actctatgtagaacctcacataattgtatattctaactggg
|||| | |||||||||| |||||||||||||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| | | || || || | | || | || | || | | | | | || | | || | | ||| || | | | |
CAACACCACAGAAATTAGAGAATTAATAGTTCGTTGTATTTCACAGATGGTCCTTAGCCGTGTCAGTAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtaatgttgaagtttgcttgattctcccatccccctgttccctcctctctccctagacatggtttcagaccatttgataaacaacaaaaactgaaactgt-------
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 5'ss of exon 8
CAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtatgttaatgcttttc-atcactaattttcat-------tatcatctatgattt----------gaaaatttgcttactctatg-tagaacctcacataattgtatattctaactggg----------------------------------------------------------------------
|| ||| | ||||| | ||| ||||||||||||||||||| || ||||| || |||||||| | |||||||||||| || |||||||||||||| | |||| |||| ||| | | || | || || | ||||||| ||||| | | | | | | |||| | || || || | || |||
CAGTTCTGCTGAAATAAGAGAACTAATAGTTCGGTGCATTTCTCAAATGGTACTCAGCCGTGTCAGTAATGTGAAATCAGGGTGGAAAAGTGTTTTCAAGgtacag-aatgttttcctagcatctgcctgtatgtgaatatacagtatatgattaaggtttaagagaaaaaacgttcaacccaggatagaggatactatgctta-gtagtttatctgctcgtgttttgttttttataagacacactctagtggtcgacatgttttactgagtggccagtttcctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161713726|gb|FC063751.1|FC063751EST: TCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATG GTTTTTACGGCTGCAGCTGCTGATGAAAGGAAGAATATAGTCTTGCTAGCC
genomic: TCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtatgttaat ... ctatgttcagGTTTTTACGGCTGCAGCTGCTGATGAAAGGAAGAATATAGTCTTGCTAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAACTCTACAGAAATTAAGGAATTAATAGTTCGGTGCATTTCACAGATGGTCCTTAGCCGTGTGAATAATGTGAAATCTGGCTGGAAAAGTGTTTTTATGgtatgttaatgcttttcatcactaattttcattatcatctatgatttgaaaatttgcttactctatgtagaacctcacataattgtatattctaactggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt