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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCAgtacagcaaactctgtgatgatttcctttttcttttttgctaatcctattttctttccctccagagctgtttgaaatgattctcatgcatttaccacattctttag

Basic information

species Vitis vinifera
transcript Vv03s0038g02830.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 8
GTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCAgtacagcaaactctgtgatgatttcctttttcttttttgctaatcctattttctttccctccagagctgtttgaaatgattctcatgcatttaccacattctttag
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GTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCCCGTCTTATTCCAgtaaatcaaattatatgat--------ttttcttctataattgttttaccatttatgatttggaa----tttgaggtttatttgttgcatctatgtag--------

upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 8
GTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCAgtacagcaaactctgtgatgatttcctttttcttttttgctaatcctattttctttccctccagagctgtttgaaatgattctcatgcatttaccacattctttag
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GTCTGCTTATTGTGATGCTCAACTGCCACCTGAAAACTTAAGAGAATTCTTGCCCCGTCTTATTCCAgtaaatcaaattttacaat--------ttttcttctataattgttttaacatgtaagatttggaa----tttgaagttcatttgttgcatctatgtag--------

upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 8
GTCTGCATATTGTGATGCACAGTTACCACTTGAGAACTTGAGAGAATTCTTGCCACGTCTAATTCCAgtacagcaa-actctgtgatgatttcctttttcttttttgctaatcctattttctttccctccagagctgtttgaaatgattctcatgcatttaccacattctttag
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GTCTGCATACTGTGATGCTCAGCTACCTCCAGAGAACTTGAAAGAGTTTCTGCCACGCCTAATTCCAgtatagtgatacttttccttttcttcagtatattcatgggcacttaataatttacataattccag-----tttgtaatgttacataaa-atatatc---tgttttag