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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattgaccaatttatttttattattattattatttttatcttacagacccaagattttagtcccaaggattgtcctttgttagtccaaatattta...

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 8
GCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattgaccaatttatttttatt--attattattatttttatcttacagacccaagatttta----gtcccaaggattgtcctttgttagtccaaatattta--------------------------------
|  ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||||||  | ||| |     | ||||| | | ||   ||  |||  ||   |||  |   | |||    ||     | || |  ||||     ||  |    | ||    | |   |   ||   | |                                
GTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGGAAGAATCTAATATGCAAAgtacagaataacatgttactttcaatctgattcatgccagtttccatttgtttgctcatgcatttatagactcttacaactcgtagggtatagctattaaacctgatgaagtgatggtatcttctctatttgatgcag

upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G11230.1 (Glycine max), 5'ss of exon 4
GCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattgaccaatttatttttatt--attattattatttttatcttacagacccaagatttta---gtcccaaggattgtcctttgttagtcca-aatattta------------
   ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||||||  | | | |     | ||||| | | ||   ||  |||| ||   |||  |   | |||    ||     |  | |  ||||      |  |  | |        || ||| | |  | |||            
ATCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGGAAGAATCCAATATGCAAAgtacagaataacatgttgcttttaatctgattcatgccagtttccatttgtttgctaatgcatttatagactcttacaactcatagggatttgtctatagcaattaaacctgatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110717429|gb|EE093280.1|EE093280
EST:     AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAG                         GAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
genomic: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattg ... ttcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
EST: gi|37189643|gb|CF608992.1|CF608992
EST:     AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAG                         GAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG
genomic: AACAATCATACTGCATGCAACAAGGGAACAGGAACCAGCTACTGCATCAGgtacaaattg ... ttcaatgcagGAACCATAACATGGTATCTAAGTGGGGATGCAATGAAGGGTGTTGAAGATG