1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTGAGACAGACTGTGAGGTGGATTTTGCACCTCCTCTTGATTTCAAAGAACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatctcatcagcttatttagctatgtttcatttatttcacattgtctttctttcattccatcatagttctaggtttccattccaacaagcccact...
species | Vitis vinifera |
transcript | Vv03s0038g00750.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110687487|gb|EE064951.1|EE064951
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAAGCAGCAGCTGAAG TTCTAGAAGCTCCAGTAGAGCCTGAAC-AAAGTTCTACCCCTTCTGTGGAGEST: gi|110693293|gb|EE069397.1|EE069397
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|26257918|gb|CA808981.1|CA808981
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110373345|gb|EC937572.1|EC937572
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: GCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110372363|gb|EC936521.1|EC936521
genomic: GCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110416730|gb|EC982730.1|EC982730
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110698550|gb|EE076176.1|EE076176
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCAGTTGCACCTGTTCCCCTGNGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAAAGCCTGAAACAAAGTTCAACCCCTTCTGTGGAGEST: gi|27582452|gb|CB005147.1|CB005147
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110373059|gb|EC937266.1|EC937266
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: GCCTGTTGC-CCTGTTTCCCTTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110724233|gb|EE099882.1|EE099882
genomic: GCCTGTTGCACCTG-TTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAAGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTEST: gi|26263375|gb|CA814438.1|CA814438
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCT
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110723124|gb|EE100074.1|EE100074
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCAGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAAC-AAAGTTTCA-CCCCTTCTGTGGAEST: gi|110401031|gb|EC967624.1|EC967624
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTT-CAACCCCTTCTGTGGA
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|51051607|gb|CO819141.1|CO819141
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110372159|gb|EC936308.1|EC936308
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110391465|gb|EC956442.1|EC956442
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|26263426|gb|CA814489.1|CA814489
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCCCCTGTTCCCCTGGGCAGGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAGEST: gi|110409595|gb|EC975261.1|EC975261
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
EST: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAG TTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
genomic: ACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatct ... ctgttctcagTTCAAGAAGCTCCAGTAGAGCCTGAACCAAAGTTCAACCCCTTCTGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAGACAGACTGTGAGGTGGATTTTGCACCTCCTCTTGATTTCAAAGAACCAGAAAAGCCTGTTGCACCTGTTCCCCTGGGCAAGGCAGCAGCTGAAGgtgaacatctcatcagcttatttagctatgtttcatttatttcacattgtctttctttcattccatcatagttctaggtttccattccaacaagcccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG