Sequence
atgc intronic sequence ATGC exonic sequenceCACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os10g40590.1 (Oryza sativa), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttatt-catggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc--
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AACGGATTCAAGACTCAGGCCAGATCAGCGGCATCTAGAGAATGGGGAGTACGAAAAGGCTAACTCTGAAAAATTGCGCCTGGAGACGAGGCAGAGGATGgta--agta-ttcttgttctaaaaatttccttaattttttttatcacagtttttaaattcttacctgcttcactgtactcgtacatcgaactacactgaattt
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G061099_T01 (Zea mays), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatc-cattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc
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GACGGATTCAAGGCTGAGACCAGATCAACGGCACCTGGAGAATGGGGAGTACGAGAAGGCCAATGCTGAAAAACTGCGCCTCGAGACACAGCAACGGATGgttgtacacattttacattgctatactttttttttctcatgaaagctacatcatgatcactgatcgactccatttctacattgtttgggcactgcttgca-
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G409265_T03 (Zea mays), 5'ss of exon 4
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttcccta--tttcttcaa---tccattttattca-----tggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc------------------------------------------------------------------------------------
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AACGGATTCAAGGCTGAGACCAGATCAACGTCACCTGGAGAATGGGGAGTACGAGAAGGCCAATGCTGAAAAACTGCGTCTCGAGACACGGCAGCGGATGgttgtacccattttgcattgctctgcttttcatgaaagttacatcatgatcactgattgactccattcttatattgtttgaatacctgcctggaccttgtggtcttggacgtacgtggtggactgaattccatcgttggatgtctgatgcttttctgccctataactgaagttttgtgtggtcgtcgtctgcag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM5G875564_T03 (Zea mays), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc
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AACGGATTCAAGACTCAGACCAGATCAGCGACATGTAGAGAACGGGGAGTATAGTAAGGCCAATGCTGAGAAGCTGCGACTGGAGAGGAGGCAACGGATGgtatg-----cccatgcatctcgaatatttggcgacaaatagaatagaaaagcttatgtaattggattttcttcactg--cag-----------------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G41940.1 (Glycine max), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattt-tattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc---
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CACGGATTCCAGGCTCAGACCAGATCAACGGCATCTAGAGAATGGGGAATACGAGAAGGCCAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtacgtcttttctgctatgagcacgcattctcgttccccttgtatttggagttttcggggtacat-acatgagggtttag---agttctgttttctggcctgtg
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G04340.2 (Glycine max), 5'ss of exon 10
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagt-agctcctcctttccctatttc-------ttcaatccattttattcatggcatcattgtttgatgattttattatttaa--ccaaattggagattcttgtgc
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CACGGATTCCAGGCTGAGACCAGATCAGCGGCATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAAAAACAAAGGTTGGAAAAGAGGCAAAGAATGgtatgtttgaactcttccatggtttgttcgagaaacgtgcattctatctcttcttttggattcttgtttgatcatgtgcttgtgaatttcttaactgtat----------
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G03420.1 (Glycine max), 5'ss of exon 11
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc----
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CACGGATTCCAGGCTCAGACCAGATCAACGGGATCTAGAGAATGGGGAATACGAGAGGGCTAATTTGGAGAAACAAAGGTTGGAAAAGCGGCAGAGAATGgtatgtctgaattctgatagctttttcgtctttg-ctgctatgagcatg-cacgaattgtcgttccccttgtatttggagta--ttgggggtagatgagggttt
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G14820.1 (Glycine max), 5'ss of exon 10
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagt-agctcctcctttccctatttcttcaa--tccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc-
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CACGGATTCCAGGCTGAGACCAGACCAGCGACATCTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAAAAGAGGCAAAGAATGgtatgtttgaactctttcgtgctttgttcgagaaacgtgcattctatcctt--tctttttacctttcgttgtaa--atttggggttcttgtttgaccatgtgcg
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G22540.3 (Arabidopsis thaliana), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccat--tttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc
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CACAGACTCTAGGCTCAGACCAGATCAACGGCATCTTGAGAATGGTGAATATGAGAAGGCGAACTTAGAGAAACAACGGTTAGAAAGAAGGCAAAGAATGgtacgt-cacctatacatttcactggtccatgcatatgtaagccctgaatgaattaactttcagagaacatgaggactaatacatagaatgagcttctgtc-
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT4G12460.1 (Arabidopsis thaliana), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc--
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AACAGATTCTAGGCTCCGACCAGATCAACGACACTTGGAGAACGGTGAATATGAGAAGGCAAATGAAGAGAAACAAAGATTAGAGAGAAGACAAAGAATGgtacactgagtatctcaa--cactaattctctggtccatga-attcattaacttttttttaaaatgttttaacaactg--taaatggcttatgattctgcag
upper sequence: Vv02s0154g00250.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: PP1S40_145V6.1 (Physcomitrella patens), 5'ss of exon 9
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaa--tccattttattc--atggcatcatt--gtttgatgattttattatttaaccaa-attggagattcttgtgc----------------------------------------------------------
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TACAGATTCAAGGTTGAGACCTGATCAAAGACATCTAGAGAATGGCGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAACAAAAGCAGCGACGGgtgggtgtcataatgtccttgccttttccagagaattgcatgttatgctgatggagctatgtagattacgtgcacgagcattgaagggccagtgcacatgtatacggtttgcattataatctaaggaaactatttagaaactgatttaagagttggatggaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188733|gb|CF608082.1|CF608082EST: ATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATG TCAAGGAAATTACAAGAAAATGGATGGAAACCAAAGTGGTTCGAGAGAGAA
genomic: ATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtag ... tcttgtacagTCAAGGAAATTACAAGAAAATGGATGGAAACCAAAGTGGTTCGAGAGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACGGATTCAAGACTTAGACCAGATCAACGACATCTAGAGAATGGAGAATATGAAAAGGCAAATGCAGAAAAACTACGGTTAGAGAAGCGGCAGAGGATGgtatgagtagctcctcctttccctatttcttcaatccattttattcatggcatcattgtttgatgattttattatttaaccaaattggagattcttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa