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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacatattcccttattttggttttttttcatacttcatactgattttcatggagaaatgagagcttctagttctgaattttttggtaaaactggtgcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00400.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715153|gb|EE092874.1|EE092874
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110714669|gb|EE091838.1|EE091838
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCAGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|30128817|gb|CB914156.1|CB914156
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110377757|gb|EC942842.1|EC942842
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|30251405|gb|CB969138.1|CB969138
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110391590|gb|EC956576.1|EC956576
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|18459501|gb|BM437779.1|BM437779
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110698014|gb|EE075544.1|EE075544
EST:     AGGAGCAGCACACATTGAAAGGCTTCTACA-TGAAGTGGGGGCAACACAT                         GGATCAGCAAAAAATCGGCCCCCATCCTGAACTTCAAG
genomic: AGGAGCAGCACACATTGAA-GGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAG
EST: gi|110375405|gb|EC940389.1|EC940389
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110685994|gb|EE063201.1|EE063201
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCNACACAT                         GGATCAGCAAAGA-TCTGCCCC-ATCCTGCA
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCA
EST: gi|110698866|gb|EE076852.1|EE076852
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTT
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTT
EST: gi|110423673|gb|EC990024.1|EC990024
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACTGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110701134|gb|EE078400.1|EE078400
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCAGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110360568|gb|EC923781.1|EC923781
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110364047|gb|EC927689.1|EC927689
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110361656|gb|EC925145.1|EC925145
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110698827|gb|EE076773.1|EE076773
EST:     NGAGCAGCACACATTGAAGGCTTCTACCAGTGA-GTGGTTGNCA-CACAT                         GGATCAGCAA-GAATCTGCCCCCATC-TGCACTTCA
genomic: GGAGCAGCACACATTGAAGGCTTCTAC-AGTGAAGTGGTTG-CAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCA
EST: gi|110375774|gb|EC940791.1|EC940791
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110362506|gb|EC926047.1|EC926047
EST:     GGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCGTGCACTTCAAGTATAAGACCGGGC
genomic: GGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110698396|gb|EE075846.1|EE075846
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGGTGCAAAACAT                         GGATCAGCAAAGA-TCTGCCCCCATC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATC
EST: gi|110396078|gb|EC961753.1|EC961753
EST:     CAGGAGCAGCACACATTGAAGGC-TCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110692352|gb|EE071502.1|EE071502
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|110369475|gb|EC933635.1|EC933635
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|33408383|gb|CF214010.1|CF214010
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAA-GAAATCTGCCCCCATCCTGCACTTCAAGTCT
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAA-TCTGCCCCCATCCTGCACTTCAAGTCT
EST: gi|110698242|gb|EE075557.1|EE075557
EST:     CAGGAGCAGCACACATTGAAAGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATC
EST: gi|110362390|gb|EC925920.1|EC925920
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTATAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|33410372|gb|CF215999.1|CF215999
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|18458990|gb|BM437268.1|BM437268
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|22012950|gb|BQ797984.1|BQ797984
EST:     CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
EST: gi|351029203|gb|FQ435403.1|FQ435403
EST:     CACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACAT                         GGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC
genomic: CACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacat ... actggtgcagGGATCAGCAAAGAATCTGCCCCCATCCTGCACTTCAAGTCTAAGACCGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGGATGTTTCAGGAGCAGCACACATTGAAGGCTTCTACAGTGAAGTGGTTGCAACACATgtagcaacatattcccttattttggttttttttcatacttcatactgattttcatggagaaatgagagcttctagttctgaattttttggtaaaactggtgcag

- - - - - -  GGAGCA
- - - - - - - GAGCAG
- - - - - - - - - - - - - TTGAAG