Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaaattctaactagcaattacagtgattatatttctctgattagcttttttcttttatatgattttttgtttctgtgtattgctatatgt...

Basic information

species Vitis vinifera
transcript Vv02s0025g04090.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G09710.1 (Glycine max), 5'ss of exon 9
TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaaattctaactagcaattacagtgattatatttctctgattagcttttt----tcttttatatgattttttgtttctgtgtattgctatatgt-------------------------------------------------------------------
 |||||||||||||| ||||| ||||| |||   || |||||||| || ||||| || |||||||  ||||||||||| || || |||||||| ||||| ||| |||  ||||    ||| |      | |  | ||| |  |||||   ||   |||||    || ||| | | ||||| | ||    | ||||  |  |                                                                      
CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCTCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTATGGAATTTTCGGGAGgttggtacttcaa-caataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagttgttgaaaatttgaaagaaactttcttgtccttaacag

upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA09G09670.1 (Glycine max), 5'ss of exon 10
TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaaattctaactagcaattacagtgattatatttctctgattagcttttt----tcttttatatgattttttgtttctgtgtattgctatatgt-------------------------------------------------------------------
 |||||||||||||| ||||| ||||| |||   || |||||||| || ||||| || |||||||  ||||||||||| || || |||||||| ||||| ||| |||  ||||    ||| |      | |  | ||| |  |||||   ||   |||||    || ||| | | ||||| | ||    | ||||  |  |                                                                      
CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCTCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTATGGAATTTTCGGGAGgttggtacttcaa-caataatttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagtcgttgaaaatttgaaagaaactttcttgtccttaacag

upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G38410.1 (Glycine max), 5'ss of exon 5
TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaa-attctaactagcaattacagtgattatatttctct-gattagcttttttcttttatatgattttttgtttctgtgtattgctatatgt-------------------------------------------------------------------
 |||||||||||||| ||||| ||||| |||   || |||||||| ||  |||| || |||||||  ||||||||||| || ||||||||||| ||||| ||| |||  |||| | |     |  |   |  | |  ||||  |  ||| | ||   |  |||| ||| | | ||||| | ||    | ||||  |  |                                                                      
CAAAATTGGTGTCAGCTATGAAGCTTTTAATCAACAACCAAACTTTTGCGCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTGTGGAATTTTCGGGAGgttggtacttcaacaataattttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattttctattcacttctatttttgcaaaatggatttggagaaaaacttcattgatagtcattgaaaatttgaaagaaactttcttgtccgtaacag

upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G02850.1 (Glycine max), 5'ss of exon 9
TAAAATTGGTGTCAGTTATGAGGCTTTCAATGGGCAGCCAAACTTCTGTTCTTCCCCATTTTGGAATTGCTTGCATAACCAGTTGTGGAATTTCCGGGAAgttagtatatcaaattctaactagcaattacagtgattatatttctctgattagcttttt----tcttttatatgattttttgtttctgtgtattgctatatgt-------------------------------------------------------------------
 |||||||||||||  ||||| ||||| |||   || |||||||| ||  |||| || |||||||  ||||||||||| || ||||||||||| ||||| ||| |||  ||||    |||||      | |  | ||| |  |||||   ||   |||||    || ||| | | ||| | | ||    | ||||  |  |                                                                      
CAAAATTGGTGTCAACTATGAAGCTTTTAATCAACAACCAAACTTTTGCCCTTCTCCCTTTTGGACCTGCTTGCATAATCAATTGTGGAATTTTCGGGAGgttggtacttcaa-caataacttttttcttctttaattcttattctcatcttgcttttttggtttcatttttgtcattctcttttcacttctatttttgcaaaatggatttggagaaaaacttcattgatagtcattgaaaatttgaaagaaactttcttgtccgtaacag