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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCTAAATTCTTTGTTCCTTTGgtaaacattaaaatgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g03630.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G32190.1 (Glycine max), 5'ss of exon 3
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCTAAATTCTTTGTTCCTTTGgtaaacatt-----aaaatgccttctc---attggtttccttatgtattctaaat----agagtgataatttggtttcaggcctt-tgctgaca---attgtaaat-cttttgcag----------------
||||||||| |||||||||   |||||||||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||| |||||| ||| |||||   | |     || || |  | |    | |  |||  |||| |  |  |  |    |      |  |||   || |  |||| || | | |   || |||  | |||||| ||                
TGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCTAAATACTTTGTGCCTCTGgtagttaattatataacatacgctttttaaaattatttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttacttttgaagggttttctttgtgcag

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G01680.1 (Glycine max), 5'ss of exon 4
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCTAAATTCTTTGTTCCTTTGgtaaacatt-----aaaatgccttctc---attggtttccttatgtattctaaat----agagtgataatttggtttcaggcctt-tgctgaca---attgtaaatcttttgcag----------------
||||||||| |||||||||   |||||||||||||| |||||||| || |||||||||||||| ||||| |||||||| ||||||| |||||| ||| |||||   | |     || || |  | |    | |  |||  |||| |  |  |  |    |      |  |||   || |  |||| || | | |   || |||  |  |||| ||                
TGCTCTTTCTCAGATTGTTAGACTTGTTGAGTCAGCACAGATGGCCAAGGCTCCTGTGCAGAAGTTTGCTGACCGCATTTCTAAATACTTTGTGCCTCTGgtagttaattatataacatacgctttttaaaattttttttttatttgattcatgtcttcaagacattttttttaattgaatccttatgtttatatatatagtacttactttgaagggttttctttgtgcag

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G42790.1 (Glycine max), 5'ss of exon 2
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCTAAATTCTTTGTTCCTTTGgtaaacattaaa-atgccttctcattggtttccttatgtattctaaatagagtgataatttggtttcaggcctttgctgacaattgtaaatcttttgcag
||||||||| ||||||||||  ||||| |||||||| |||||||||||||| ||||| ||||| ||||| || ||||| || |||| |||||| ||| ||||||  || ||   ||   | | ||        || | |||| | | || |    |  ||  | || |     | | ||     |||  |          
TGCTCTTTCGCAGATTGTTCGTCTTGTGGAGTCAGCTCAGATGGCTAAAGCGCCTGTTCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTCTGgtaattatgaattgtgtgatgtaatgaaggaatttgtttatttttattaaatccttgtttgtgcttaaaagggtggatgttttctgtgcag---------

upper sequence: Vv02s0025g03630.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G42800.1 (Glycine max), 5'ss of exon 2
TGCTCTTTCACAGATTGTTCAGCTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCTGTGCAGAAATTTGCAGACCGCATCTCTAAATTCTTTGTTCCTTTGgtaaacat----taaaatgccttctcattggtttccttat-----gtattc-taaatagagtgat---aatttggtttcaggcctttgctgacaattgtaaatcttttgcag
|||||| || ||||||||||  ||||||||||| ||||| ||||||||||||||||| || ||| |||| || |  || |||||||  ||||||||| |||||| | |      || | | || |  |  |||| || ||      | ||  |  || |||| |    || |   | |  |  | | | || || || ||  | ||||||||
TGCTCTCTCGCAGATTGTTCGACTTGTTGAGTCTGCCCAAATGGCTAAAGCTCCTGTCCAAAAAATTGCTGATCATATTTCTAAATATTTTGTTCCTATGgtaagcctagtactaactacttttttctgagtttgctcattagatatgtttattgatggagtcagaggaactacatctatgctcatcggtgccatttttattttttttgcag