1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttcttcctgctaatttcatttccatacagcaagcttaattcattgggatcactattattattacttaaaaggcctgtaagtgctgtttatttg...
species | Vitis vinifera |
transcript | Vv02s0025g03550.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349816388|gb|FQ399498.1|FQ399498
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349815797|gb|FQ400953.1|FQ400953
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349812356|gb|FQ406377.1|FQ406377
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349822082|gb|FQ408411.1|FQ408411
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|110718884|gb|EE096229.1|EE096229
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|351015072|gb|FQ444361.1|FQ444361
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349812229|gb|FQ411824.1|FQ411824
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349818651|gb|FQ403286.1|FQ403286
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349822573|gb|FQ412797.1|FQ412797
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|351042322|gb|FQ442789.1|FQ442789
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGCEST: gi|349813169|gb|FQ411409.1|FQ411409
genomic: GCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
EST: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCAT GCACTTGACCCGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
genomic: TTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttc ... tttcaatcagGCACTTGACCTGATACGGGACAGAAATATTCAGATGCTAACGGACTCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGGTAACACCTGAAAGTGTAATGTATAGTTTTGGCACCCTTTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATgtaattcttcttcctgctaatttcatttccatacagcaagcttaattcattgggatcactattattattacttaaaaggcctgtaagtgctgtttatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaggc