Sequence
atgc intronic sequence ATGC exonic sequenceCAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattattcttttcatgttcagttgtttgtcaaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G02620.1 (Glycine max), 5'ss of exon 7
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattattcttttcatgttcagttgtttgtcaaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat
|| ||||||||||||| |||||||| |||||||||| | ||||||||||||||||||| || || || |||| || || ||||| |||||| |||| | ||| | |||| | | |||||| | | | | || || | |||| ||| || | | || |
CACTTGTGAGCTTTGGAAAGGTTACTCCTGAACAAAAGCAAGAAGTTGAAAAGTTTGGATTAGCAATgtattcatgagatgaatttttgcaagtggtgcgttat-tcatttgacacattattactctttctctta-ttattagctgtaaaa-gtt--cactgaaaatatact-----------------------
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G36910.1 (Glycine max), 5'ss of exon 8
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattattcttttcatgttcagttgtttgtcaaaaaatgttggcaattgacatgaatctgtgctgcatg-aaagttatctat-
|| ||||||||||||| |||||||| |||||||||| | ||||||||||| ||||||| || || || |||| ||||| ||||| |||||| |||| | ||| | |||| | | |||||| | | | | || || | |||| ||| | |||| | |||| | | | | ||| |
CACTTGTGAGCTTTGGAAAGGTTACTCCTGAACAAAAGCAAGAAGTTGAAGAGTTTGGGTTAGCAATGTATTCATGGGATGAATTTTTGCAAGTGgtgcgttat-tcatttgacacattattactctttctctta-ttattagctgtaaaaggttcactgaaattctgaaaatatgctccttctataattactttgc
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G43470.5 (Glycine max), 5'ss of exon 8
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattatt-cttttcatgttcag-ttgtttgt--caaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat
||||||| ||||| || |||||||| |||||||||| | ||||||||||||| | ||| |||| ||||||| ||||| |||||||| ||| |||| || ||| | |||||| || |||| | || || || |||| | | | | | | |||| | | | || || | | |
CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttat-tcatttcaagtactattacgctttatccacaaattgtatatacttggcattatctgtaatttctagacagaaaagatgtatcacaagcttg---
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 8
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattattct-tttcatgttcagttgtttgtcaaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat
||||||| ||||| || |||||||| |||||||||| | |||||||||||| ||||| ||||| ||||||| ||||| ||||| || | | |||| || ||| | ||||||| || |||| | || || || | || | ||||| | | | | | |||| | || |
CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAGTTTTGGGTTGGCAATATATTCATGGGATGAATTTTTACTAGTGgtgggttat-tcatttcatgtactattatgctttatccacaagttttataatagaaatgaaagtgctccttctataattacttggcattatctgtaatttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351028751|gb|FQ433181.1|FQ433181EST: TTGAAAAGTTTGGTTTGGCCATATATTCTTGGGAGGAATTCTTGCAACTG GGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGT
genomic: TTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatg ... ttgctcacagGGAGATGATAAAAAATTTGATCTTCCATTGACAAAGAAAAACGACATTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattattcttttcatgttcagttgtttgtcaaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa