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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGTGTACTCTGACTATCTTGCTTCGGCTGGTAAAAACTTGAACTGTGCTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAGgtaatttgatcctggactggattgtagaatgttatggatgagattatatatgagtgagggtgtttgaagatactctttcttgtgattggaataaacaagtacagagttttaaatgggatgatttgtaaacttgcag

Basic information

species Vitis vinifera
transcript Vv02s0025g01380.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409333|gb|CX017585.1|CX017585
EST:     TGCAAAATCTCAG                         GTGGATTATATTCTTGGAGACAACCCAAGAGCCACAAGTTACATGGTGGGG
genomic: TGCAAAATCTCAGgtaatttgat ... aaacttgcagGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
EST: gi|33405263|gb|CF210890.1|CF210890
EST:     CTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAG                         GTGGATTATATTCTTGGAGACAACCCAAGAGCCACAAGTTACATGGTGGGG
genomic: CTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAGgtaatttgat ... aaacttgcagGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
EST: gi|110370959|gb|EC934612.1|EC934612
EST:     GCAAAATCTCAG                         GTGGATTATATTCTTGGAGACAACCCAAGAGCCACAAGTTACATGGTGGGG
genomic: GCAAAATCTCAGgtaatttgat ... aaacttgcagGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
EST: gi|30297299|gb|CB974093.1|CB974093
EST:     TCATTTGCAAAATCTCAG                         GTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
genomic: TCATTTGCAAAATCTCAGgtaatttgat ... aaacttgcagGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
EST: gi|34544409|gb|CF512641.1|CF512641
EST:     CTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAG                         GTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG
genomic: CTGCTGGCAGTGTCTCACCATCTGGGCTTATTTCATTTGCAAAATCTCAGgtaatttgat ... aaacttgcagGTGGATTATATTCTTGGAGACAACCCAAGAGCCACGAGTTACATGGTGGGG