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ACTTGAAACACAATTCAAGATTTTGAGTAAATTAGCAGAGGAAAATTGGGATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatgatctcattttactcatctctgcaatcaagtaggaacaaaaataaaaattctttctaattttgtatcattcaaaaataaatgtaagaacac...
species | Vitis vinifera |
transcript | Vv02s0012g02530.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAG TGGATGGAGCAAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|30330294|gb|CD013556.1|CD013556
genomic: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAG TGGACGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|77588902|gb|DV223694.1|DV223694
genomic: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: GCAGCATTCATAGGTCAGAGAAG TGGATGGAGCAAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|30254524|gb|CB971269.1|CB971269
genomic: GCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAG TGGATGGAGCAAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|30254602|gb|CB971347.1|CB971347
genomic: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAG TGGATGGAGCAAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|71888427|gb|DT037482.1|DT037482
genomic: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: GCAGCATTCATAGGTCAGAGAAG TGGATGGAGCAAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTGEST: gi|30329683|gb|CD012945.1|CD012945
genomic: GCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
EST: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAG TGGACGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
genomic: ATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatg ... acttgaacagTGGATGGAGCGAGCCACTGGGCCAGACCAAGAAGCAGTTGTTAATGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGAAACACAATTCAAGATTTTGAGTAAATTAGCAGAGGAAAATTGGGATGCATATAAATGTGTGATCAACAGTTGCAGCATTCATAGGTCAGAGAAGgtaatttatgatctcattttactcatctctgcaatcaagtaggaacaaaaataaaaattctttctaattttgtatcattcaaaaataaatgtaagaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca