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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTAAGGTGATTGATTTTGGTAGCACAGCTTTTGAGTGTCAAGATCACAGCTATATTGTTTCCACTAGGCACTACCGAGCGCCTGAGGTTATTCTTGgtgtgtttatatgttcctttctgttatcattgacttgcttacatttcagcggtcctcagtgtcatcatatttgtttttcag

Basic information

species Vitis vinifera
transcript Vv01s0137g00580.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 5'ss of exon 8
GCTATTAAGGTGATTGATTTTGGTAGCACAGCTTTTGAGTGTCAAGATCACAGCTATATTGTTTCCACTAGGCACTACCGAGCGCCTGAGGTTATTCTTGgtgtgt---ttatat-gttcctttctgttatcattgacttgcttacatttcagcggtcctcagtgtcatcatatttgtttt--tcag
||||||||||||||||||||||| |||||| | | |||    || ||||| | |||| | || || |||||||| || ||||| || || |||||  | ||| | |   ||   | || |    |  |     |   | || |||   || |  | |    | ||  ||     ||||| |  ||||
GCTATTAAGGTGATTGATTTTGGCAGCACAACATATGACCAGCAGGATCAGACCTATGTGGTGTCTACTAGGCATTATCGAGCTCCAGAAGTTATCTTGGgtatttgtcttgcctagtgcaaagccttccctgtcagcgtgattatggttta-tgtttacgattggaatggctgttgttctgttcag

upper sequence: Vv01s0137g00580.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G179308_T03 (Zea mays), 5'ss of exon 7
GCTATTAAGGTGATTGATTTTGGTAGCACAGCTTTTGAGTGTCAAGATCACAGCTATATTGTTTCCACTAGGCACTACCGAGCGCCTGAGGTTATTCTTGgtgtgtttatatgttcctttc--tgttatcattgacttgcttacatttcagcggtcctcagtgtcatcat--atttgtttttcag
||||| |||||||||||||||||||||||  | | |||    || ||||| || ||| |||| || || ||||| || || || || || ||||| || ||| | | | | |||||  |     | | |   |   |       ||||  | |    |   || |  | |  ||    | |||||
GCTATCAAGGTGATTGATTTTGGTAGCACTACCTATGATCAACAGGATCAGAGTTATGTTGTGTCGACGAGGCATTATCGGGCTCCAGAAGTTATACTGGgtatctat-tgtgttcagtgaaaagcttttcctagttcagcctgattt-ggtgtcattttatgactgcgtggatcatgtgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698778|gb|EE076668.1|EE076668
EST:     CAGCTATATTGTTTCCACTAGGCACTACCGAGCGCCTGAGGTTATTCTTG                         GGCTTGGATGGAGTTATCCATGTGACATGTGGAGCGTTGGTTGTATATTGG
genomic: CAGCTATATTGTTTCCACTAGGCACTACCGAGCGCCTGAGGTTATTCTTGgtgtgtttat ... tgtttttcagGGCTTGGATGGAGTTATCCATGTGACATGTGGAGCGTTGGTTGTATATTGG