Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGTGAAAACAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgacacttaacccactactgcatatcctttggattatcttgatttttaataagtagaattgacatccagcaaaaaatgatggatggtaaaacag...

Basic information

species Vitis vinifera
transcript Vv01s0127g00720.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322888|gb|CD006150.1|CD006150
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|34547687|gb|CF515919.1|CF515919
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGGATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|110378531|gb|EC943668.1|EC943668
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|110410367|gb|EC976048.1|EC976048
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|110367537|gb|EC931474.1|EC931474
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|32271842|gb|CD721001.1|CD721001
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|34548812|gb|CF517044.1|CF517044
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|225387936|gb|GO307567.1|GO307567
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|32248004|gb|CD713823.1|CD713823
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|30328347|gb|CD011609.1|CD011609
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|34548905|gb|CF517137.1|CF517137
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|30128124|gb|CB913463.1|CB913463
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAG
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAG
EST: gi|110387082|gb|EC951724.1|EC951724
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
EST: gi|34547755|gb|CF515987.1|CF515987
EST:     CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAG                         GAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA
genomic: CAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgac ... ggttttgcagGAGGCTGTGAATGTATCCCTGGGAAACCTGTTAACCTACCCATTTGTCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAGAACAGTGGGTCCAAATCTGTTTACCTGCCAAGTCCAAGGTGAAAACAGAATACACTGATCTGACTTTCGCGGAGCAGTGCACTAACTGTGAGAAGgtatgttgacacttaacccactactgcatatcctttggattatcttgatttttaataagtagaattgacatccagcaaaaaatgatggatggtaaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtaaaa