Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggttttgttttgtttttagtttgtttgttttttttttttttttttttttctgataagttggattgatgagttttatttggagaaaaatttcaaact...

Basic information

species Vitis vinifera
transcript Vv01s0026g01700.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418753|gb|EC984927.1|EC984927
EST:     AAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: AAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|110693432|gb|EE069656.1|EE069656
EST:     CTCANATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|161717886|gb|FC065984.1|FC065984
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|110379389|gb|EC944580.1|EC944580
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|46910317|gb|CN545692.1|CN545692
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|71884005|gb|DT033060.1|DT033060
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|71884658|gb|DT033713.1|DT033713
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|161718575|gb|FC069322.1|FC069322
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATT
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATT
EST: gi|161719703|gb|FC069425.1|FC069425
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATT
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATT
EST: gi|110722964|gb|EE099738.1|EE099738
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCCG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|110396076|gb|EC961751.1|EC961751
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|110361687|gb|EC925180.1|EC925180
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|22011799|gb|BQ796833.1|BQ796833
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|110713393|gb|EE089276.1|EE089276
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|46918277|gb|CN547606.1|CN547606
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATATAAGCAG
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATATAAGCAG
EST: gi|161720924|gb|FC070664.1|FC070664
EST:     CTCAAATTGGCTTTGACTTGGATTCACTACAGAGGATGGTCTCTGGATTG                         GATGGGAAGATAGGTTCATTGGAATAT
genomic: CTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggtttt ... tcaattgcagGATGGGAAGATAGGTTCATTGGAATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTACTGAAGCTCGTGGTGATATTTCTCAAATTGGCTTTGACTTGGATTCACTACAAAGGATGGTCTCTGGATTGgtgaggttttgttttgtttttagtttgtttgttttttttttttttttttttttctgataagttggattgatgagttttatttggagaaaaatttcaaact

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa